Variant report

Variant	rs58563011
Chromosome Location	chr10:44477693-44477694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10508880	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1492704	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17154827	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17154915	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17154988	0.93[AMR][1000 genomes]
rs4948823	0.90[AMR][1000 genomes]
rs56803324	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs56952006	0.97[ASN][1000 genomes]
rs58037492	0.81[AMR][1000 genomes]
rs7096716	0.93[AMR][1000 genomes]
rs7898618	0.93[AMR][1000 genomes]
rs950682	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44469800-44482800	Weak transcription	Gastric	stomach
2	chr10:44476200-44478200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:44476400-44477800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:44476600-44477800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:44476600-44477800	Weak transcription	Right Atrium	heart
6	chr10:44476600-44478600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:44477000-44479000	Weak transcription	K562	blood
8	chr10:44477400-44478400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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