Variant report

Variant	rs17154827
Chromosome Location	chr10:44490532-44490533
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10508880	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1492704	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17154683	0.85[JPT][hapmap]
rs17154915	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17154988	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4948813	0.87[EUR][1000 genomes]
rs4948823	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56803324	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56952006	1.00[ASN][1000 genomes]
rs58563011	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7096716	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7898618	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs950682	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv521308	chr10:44490414-44490532	Weak transcription	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17154827	SPINT2	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44490000-44494000	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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