Variant report

Variant	rs10900035
Chromosome Location	chr10:44933116-44933117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11239050	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11492901	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11813303	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245534	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12262498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265654	0.91[AFR][1000 genomes]
rs12266045	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4948626	0.97[AFR][1000 genomes]
rs4948884	0.97[AFR][1000 genomes]
rs57385176	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7098360	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv550701	chr10:44913113-44935055	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44932200-44935800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:44932400-44933200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr10:44932400-44933400	Weak transcription	Placenta	Placenta
4	chr10:44932800-44934000	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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