Variant report

Variant	rs4948884
Chromosome Location	chr10:44918168-44918169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10900035	0.97[AFR][1000 genomes]
rs11239050	0.90[AFR][1000 genomes]
rs11492901	0.92[AFR][1000 genomes]
rs11813303	0.88[AFR][1000 genomes]
rs12245534	0.93[AFR][1000 genomes]
rs12262498	0.97[AFR][1000 genomes]
rs12265654	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266045	0.90[AFR][1000 genomes]
rs4948626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57385176	0.90[AFR][1000 genomes]
rs7098360	0.90[AFR][1000 genomes]
rs73275226	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv550701	chr10:44913113-44935055	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44907000-44918400	Weak transcription	Right Atrium	heart
2	chr10:44912200-44919800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44913000-44918400	Weak transcription	Fetal Lung	lung
4	chr10:44915800-44919600	Weak transcription	Pancreas	Pancrea
5	chr10:44916400-44919000	Enhancers	Fetal Muscle Leg	muscle
6	chr10:44917200-44918600	Enhancers	Fetal Muscle Trunk	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links