Variant report

Variant	rs11239050
Chromosome Location	chr10:44950413-44950414
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10900035	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11492901	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11813303	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245534	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12262498	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265654	0.85[AFR][1000 genomes]
rs12266045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4948626	0.90[AFR][1000 genomes]
rs4948884	0.90[AFR][1000 genomes]
rs57385176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7098360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275226	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44950000-44956400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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