Variant report

Variant	rs10900219
Chromosome Location	chr10:45971927-45971928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45965669..45968296-chr10:45969406..45974419,5	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10793619	0.82[ASN][1000 genomes]
rs10793620	0.84[ASN][1000 genomes]
rs10900218	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900220	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10900222	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11239535	0.95[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11239537	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11239541	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11239548	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11239550	0.88[ASN][1000 genomes]
rs11499089	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12265787	0.85[ASN][1000 genomes]
rs12269352	0.86[ASN][1000 genomes]
rs12767823	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1982796	0.86[ASN][1000 genomes]
rs34563674	0.88[ASN][1000 genomes]
rs57491883	0.83[ASN][1000 genomes]
rs7089063	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908745	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs963029	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964686	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10900219	ALOX5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45966400-45979800	Weak transcription	Thymus	Thymus
2	chr10:45967600-45972400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:45967600-45974800	Weak transcription	Psoas Muscle	Psoas
4	chr10:45967600-45979200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:45967600-45979600	Weak transcription	Ovary	ovary
6	chr10:45967600-45983400	Weak transcription	Right Atrium	heart
7	chr10:45967800-45980200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:45967800-45985200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:45968000-45986000	Weak transcription	HepG2	liver
10	chr10:45969400-45983800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:45969600-45983400	Weak transcription	Liver	Liver
12	chr10:45969600-45983400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:45969800-45983400	Weak transcription	Pancreas	Pancrea
14	chr10:45970600-45983400	Weak transcription	Left Ventricle	heart
15	chr10:45970800-45972000	ZNF genes & repeats	Fetal Intestine Small	intestine
16	chr10:45970800-45983400	Weak transcription	Gastric	stomach
17	chr10:45971200-45973800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:45971200-45979800	Weak transcription	Lung	lung
19	chr10:45971400-45973800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
20	chr10:45971400-45983800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr10:45971600-45972000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr10:45971600-45972000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
23	chr10:45971600-45979200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:45971800-45972000	ZNF genes & repeats	Fetal Lung	lung

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