Variant report

Variant	rs1982796
Chromosome Location	chr10:46042573-46042574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:46042311..46044795-chr10:46052336..46053839,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10793619	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10793620	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10900218	0.86[ASN][1000 genomes]
rs10900219	0.86[ASN][1000 genomes]
rs10900220	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10900222	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11239535	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11239537	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11239541	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11239548	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11239550	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11499089	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12265787	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12269352	0.92[CHB][hapmap];0.90[JPT][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12767823	0.86[ASN][1000 genomes]
rs34563674	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57491883	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7089063	0.86[ASN][1000 genomes]
rs7908745	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs963029	0.86[ASN][1000 genomes]
rs964686	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv895111	chr10:45989745-46071900	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv895112	chr10:46012620-46202216	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv1041417	chr10:46021181-46088061	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv528750	chr10:46024620-46076235	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1052233	chr10:46024620-46088061	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1047117	chr10:46027942-46075946	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:46009400-46044400	Weak transcription	Thymus	Thymus
2	chr10:46010000-46056000	Weak transcription	Esophagus	oesophagus
3	chr10:46014400-46070000	Weak transcription	Psoas Muscle	Psoas
4	chr10:46015600-46043400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr10:46018000-46052800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr10:46022000-46043400	Weak transcription	Brain Angular Gyrus	brain
7	chr10:46022000-46046600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:46022200-46043600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:46024400-46052800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:46024600-46044600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:46026200-46057600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:46026400-46044400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:46027200-46043200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr10:46027200-46047000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:46028200-46042800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:46028200-46043200	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:46028200-46044200	Weak transcription	Fetal Stomach	stomach
18	chr10:46028200-46044600	Weak transcription	Lung	lung
19	chr10:46028200-46053000	Weak transcription	Ovary	ovary
20	chr10:46028200-46055600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:46028400-46043600	Weak transcription	Brain Anterior Caudate	brain
22	chr10:46028400-46044600	Weak transcription	Adipose Nuclei	Adipose
23	chr10:46028400-46044600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:46028400-46044800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr10:46028400-46046600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:46028400-46052800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:46028800-46044600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr10:46028800-46044800	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr10:46028800-46044800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr10:46028800-46052400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:46028800-46052600	Weak transcription	Left Ventricle	heart
32	chr10:46028800-46053000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:46028800-46069200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr10:46029200-46044800	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr10:46030200-46044800	Weak transcription	Primary T cells from cord blood	blood
36	chr10:46030800-46043400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr10:46039600-46052600	Weak transcription	Spleen	Spleen
38	chr10:46040000-46054000	Weak transcription	Fetal Lung	lung
39	chr10:46040000-46056000	Weak transcription	Colonic Mucosa	Colon
40	chr10:46040200-46052400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr10:46040400-46056600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:46040800-46048600	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr10:46040800-46050800	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr10:46041000-46047200	Strong transcription	Primary B cells from cord blood	blood
45	chr10:46041400-46043600	Weak transcription	Pancreas	Pancrea
46	chr10:46041400-46043600	Weak transcription	K562	blood
47	chr10:46041400-46044600	Weak transcription	Liver	Liver
48	chr10:46041400-46044600	Weak transcription	Fetal Intestine Large	intestine
49	chr10:46041400-46051400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr10:46042000-46053800	Weak transcription	Gastric	stomach

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