Variant report

Variant	rs10900220
Chromosome Location	chr10:45983922-45983923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45983415..45984921-chr10:45987489..45990303,2	K562	blood:
2	chr10:45983824..45985525-chr10:45988162..45991006,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10466245	0.80[CEU][hapmap]
rs10793619	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793620	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10900218	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10900219	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10900221	0.81[CEU][hapmap]
rs10900222	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11239535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11239537	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239541	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11239550	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11239571	0.81[CEU][hapmap]
rs11499089	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12265787	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12269352	0.93[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12767823	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1982796	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34563674	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57491883	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7089063	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7908745	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs963029	0.91[ASN][1000 genomes]
rs964686	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45967800-45985200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:45968000-45986000	Weak transcription	HepG2	liver
3	chr10:45972200-45988000	Weak transcription	Spleen	Spleen
4	chr10:45974800-45990600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:45976400-45986000	Weak transcription	HSMMtube	muscle
6	chr10:45977000-45984400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:45977200-45985600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:45977800-45984600	Strong transcription	Primary B cells from peripheral blood	blood
9	chr10:45978000-45985400	Strong transcription	Primary hematopoietic stem cells	blood
10	chr10:45978200-45985800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr10:45978600-45985200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:45978600-45985200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:45978600-46000800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:45979000-45985200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:45979000-45985800	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:45979200-45985600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:45979400-45985600	Weak transcription	Fetal Kidney	kidney
18	chr10:45979400-45986000	Weak transcription	Brain Substantia Nigra	brain
19	chr10:45979800-45984800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:45979800-45985400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:45979800-45986200	Weak transcription	Placenta	Placenta
22	chr10:45980000-45984600	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr10:45980000-45984600	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr10:45980000-45985400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:45980800-45988800	Weak transcription	Fetal Brain Female	brain
26	chr10:45981200-45986400	Weak transcription	Colonic Mucosa	Colon
27	chr10:45981200-45987200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr10:45981800-45985000	Weak transcription	NHLF	lung
29	chr10:45981800-45987400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:45981800-45988000	Weak transcription	Colon Smooth Muscle	Colon
31	chr10:45982200-45985200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:45982200-45985600	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr10:45982200-45985600	Weak transcription	NHEK	skin
34	chr10:45982400-45984800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:45982400-45984800	Strong transcription	Primary T cells from cord blood	blood
36	chr10:45982400-45985000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:45982600-45984000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:45982600-45984400	Strong transcription	Fetal Muscle Leg	muscle
39	chr10:45982600-45984600	Strong transcription	Fetal Intestine Large	intestine
40	chr10:45982600-45984800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr10:45982600-45985000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:45982800-45984000	Strong transcription	Brain Anterior Caudate	brain
43	chr10:45982800-45984000	Strong transcription	Fetal Lung	lung
44	chr10:45982800-45984000	Strong transcription	K562	blood
45	chr10:45982800-45984200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:45982800-45984200	Strong transcription	Aorta	Aorta
47	chr10:45982800-45984200	Strong transcription	Duodenum Mucosa	Duodenum
48	chr10:45982800-45984200	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:45982800-45984400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:45982800-45984600	Strong transcription	Fetal Muscle Trunk	muscle

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