Variant report

Variant	rs10904351
Chromosome Location	chr10:4894194-4894195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4893084..4895954-chr10:5045040..5046990,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000239148	Chromatin interaction
ENSG00000151632	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10795202	1.00[ASN][1000 genomes]
rs10795206	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10795207	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10795208	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10904353	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10904357	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10904365	0.90[EUR][1000 genomes]
rs11252763	0.90[ASN][1000 genomes]
rs11252775	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11252808	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12572536	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2123350	0.89[ASN][1000 genomes]
rs2123353	0.88[ASN][1000 genomes]
rs2167698	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2167701	1.00[ASN][1000 genomes]
rs2167702	0.95[ASN][1000 genomes]
rs2278870	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2961559	0.84[ASN][1000 genomes]
rs4363494	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4880690	1.00[ASN][1000 genomes]
rs4880691	1.00[ASN][1000 genomes]
rs4881353	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4881355	1.00[ASN][1000 genomes]
rs7921112	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv948794	chr10:4863093-5227382	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1045155	chr10:4872239-5211318	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1040343	chr10:4872814-5196815	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv540462	chr10:4872814-5196815	Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv869470	chr10:4878904-5203685	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4878600-4894600	Weak transcription	Ovary	ovary
2	chr10:4880200-4894400	Weak transcription	Brain Germinal Matrix	brain
3	chr10:4886000-4909800	Weak transcription	Left Ventricle	heart
4	chr10:4888000-4896000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:4888400-4896800	Weak transcription	Spleen	Spleen
6	chr10:4888600-4895000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:4889600-4895800	Enhancers	Stomach Mucosa	stomach
8	chr10:4891200-4895600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:4891200-4899600	Weak transcription	Esophagus	oesophagus
10	chr10:4891600-4896200	Enhancers	Liver	Liver
11	chr10:4891800-4895000	Enhancers	Fetal Muscle Leg	muscle
12	chr10:4891800-4895200	Enhancers	Pancreas	Pancrea
13	chr10:4892000-4894400	Enhancers	Right Atrium	heart
14	chr10:4892000-4895000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:4892200-4917800	Weak transcription	Primary T cells from cord blood	blood
16	chr10:4892400-4894400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr10:4892400-4895800	Enhancers	Adipose Nuclei	Adipose
18	chr10:4892400-4896800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:4892600-4894200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:4892600-4895000	Weak transcription	Fetal Kidney	kidney
21	chr10:4892600-4895600	Weak transcription	Aorta	Aorta
22	chr10:4892600-4896800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr10:4892600-4899400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:4892600-4899600	Weak transcription	Fetal Stomach	stomach
25	chr10:4893000-4897000	Weak transcription	HepG2	liver
26	chr10:4893000-4925000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:4893400-4894600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:4893600-4895200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:4893600-4895400	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr10:4893600-4896000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:4893800-4894600	Weak transcription	K562	blood
32	chr10:4893800-4895800	Enhancers	Fetal Lung	lung
33	chr10:4894000-4894200	Enhancers	Fetal Muscle Trunk	muscle
34	chr10:4894000-4894400	Enhancers	Fetal Brain Male	brain
35	chr10:4894000-4894400	Enhancers	Stomach Smooth Muscle	stomach
36	chr10:4894000-4894400	Genic enhancers	A549	lung
37	chr10:4894000-4894400	Enhancers	NHDF-Ad	bronchial
38	chr10:4894000-4894600	Enhancers	Fetal Heart	heart
39	chr10:4894000-4894600	Enhancers	Hela-S3	cervix
40	chr10:4894000-4894800	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr10:4894000-4895400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:4894000-4895800	Enhancers	Colon Smooth Muscle	Colon

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