Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr10:4864313-4864850	K562	blood:	n/a	n/a
2	CEBPD	chr10:4864324-4864877	K562	blood:	n/a	n/a
3	TAL1	chr10:4864319-4864823	K562	blood:	n/a	n/a
4	RCOR1	chr10:4864374-4864855	K562	blood:	n/a	n/a
5	IRF1	chr10:4864451-4864813	K562	blood:	n/a	n/a
6	ZNF274	chr10:4864390-4864933	K562	blood:	n/a	n/a
7	STAT5A	chr10:4864409-4864814	K562	blood:	n/a	n/a
8	TBL1XR1	chr10:4864352-4864908	K562	blood:	n/a	n/a
9	BHLHE40	chr10:4864427-4864856	K562	blood:	n/a	n/a
10	GATA1	chr10:4863979-4864971	K562	blood:	n/a	chr10:4864545-4864552 chr10:4864348-4864355 chr10:4864348-4864355 chr10:4864545-4864552 chr10:4864545-4864552 chr10:4864348-4864355
11	NR2F2	chr10:4864301-4864857	K562	blood:	n/a	n/a
12	CEBPD	chr10:4864300-4864840	K562	blood:	n/a	n/a
13	CUX1	chr10:4864468-4864878	K562	blood:	n/a	n/a
14	UBTF	chr10:4864510-4864911	K562	blood:	n/a	n/a
15	MYC	chr10:4864459-4864850	K562	blood:	n/a	n/a
16	TEAD4	chr10:4864268-4864896	K562	blood:	n/a	n/a
17	MYC	chr10:4864528-4864907	K562	blood:	n/a	n/a
18	JUN	chr10:4864484-4864887	K562	blood:	n/a	n/a
19	CBX3	chr10:4864437-4864820	K562	blood:	n/a	n/a
20	GATA2	chr10:4864394-4864861	K562	blood:	n/a	chr10:4864545-4864552 chr10:4864545-4864552 chr10:4864545-4864552
21	MAFK	chr10:4864547-4864867	K562	blood:	n/a	n/a
22	EP300	chr10:4864349-4864912	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:4862571..4866456-chr10:4867109..4868922,3	MCF-7	breast:
2	chr10:4862861..4865431-chr10:5136507..5138324,2	K562	blood:
3	chr10:4862226..4865372-chr10:4867625..4871909,5	K562	blood:

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10795202	0.83[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs10904351	0.84[ASN][1000 genomes]
rs10904362	0.84[MKK][hapmap]
rs11252763	0.92[ASN][1000 genomes]
rs11252775	0.83[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs2123350	0.91[ASN][1000 genomes]
rs2123353	0.86[ASN][1000 genomes]
rs2167698	0.93[ASN][1000 genomes]
rs2167701	0.84[ASN][1000 genomes]
rs2278870	0.84[ASN][1000 genomes]
rs4363494	0.84[ASN][1000 genomes]
rs4880690	0.83[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs4880691	0.84[ASN][1000 genomes]
rs4881353	0.83[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs4881355	0.84[ASN][1000 genomes]
rs7921112	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv948794	chr10:4863093-5227382	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2961559	AKR1E2	cis	parietal	SCAN
rs2961559	AKR1E2	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4855400-4867400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:4857600-4868000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:4862400-4865000	Enhancers	K562	blood
4	chr10:4863400-4865000	Enhancers	Fetal Heart	heart
5	chr10:4863600-4867800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:4863600-4867800	Weak transcription	Osteobl	bone
7	chr10:4863600-4868000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:4864000-4867800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:4864000-4867800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:4864600-4868200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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