Variant report

Variant	rs11252775
Chromosome Location	chr10:4885806-4885807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4867480..4871698-chr10:4879074..4886734,7	K562	blood:
2	chr10:4884243..4886043-chr10:4887608..4890011,2	MCF-7	breast:
3	chr10:4878732..4883611-chr10:4884463..4888996,6	K562	blood:
4	chr10:4880162..4882842-chr10:4883559..4887211,4	K562	blood:

Variant related genes	Relation type
ENSG00000165568	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10795202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10795206	0.93[EUR][1000 genomes]
rs10795207	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs10795208	0.92[CEU][hapmap];0.88[YRI][hapmap];0.92[EUR][1000 genomes]
rs10904351	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10904353	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10904357	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10904365	0.90[EUR][1000 genomes]
rs11252763	0.89[ASN][1000 genomes]
rs11252808	0.91[EUR][1000 genomes]
rs12572536	0.93[EUR][1000 genomes]
rs2123350	0.88[ASN][1000 genomes]
rs2123353	0.89[ASN][1000 genomes]
rs2167698	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2167701	0.98[ASN][1000 genomes]
rs2167702	0.93[ASN][1000 genomes]
rs2278870	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2961559	0.83[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs4363494	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4880690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4880691	0.98[ASN][1000 genomes]
rs4881353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4881355	0.98[ASN][1000 genomes]
rs7921112	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv948794	chr10:4863093-5227382	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1045155	chr10:4872239-5211318	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1040343	chr10:4872814-5196815	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv540462	chr10:4872814-5196815	Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv869470	chr10:4878904-5203685	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4869200-4889200	Weak transcription	NHLF	lung
2	chr10:4869200-4889600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:4869200-4890400	Weak transcription	Right Atrium	heart
4	chr10:4869200-4891600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:4869200-4892200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:4869400-4886800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:4869400-4889600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:4869400-4889600	Weak transcription	HSMM	muscle
9	chr10:4869400-4891600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:4869600-4889200	Weak transcription	HUVEC	blood vessel
11	chr10:4869600-4889600	Weak transcription	NHEK	skin
12	chr10:4870600-4886200	Weak transcription	Small Intestine	intestine
13	chr10:4870600-4887800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:4870600-4891800	Weak transcription	Fetal Brain Male	brain
15	chr10:4872400-4889200	Weak transcription	NHDF-Ad	bronchial
16	chr10:4872600-4889200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:4872600-4892400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:4872800-4886600	Strong transcription	A549	lung
19	chr10:4873000-4887000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:4873000-4887600	Strong transcription	Fetal Muscle Leg	muscle
21	chr10:4874600-4891800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:4875200-4887000	Weak transcription	Fetal Intestine Large	intestine
23	chr10:4876000-4891600	Weak transcription	Brain Angular Gyrus	brain
24	chr10:4878000-4891800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr10:4878600-4894600	Weak transcription	Ovary	ovary
26	chr10:4878800-4889400	Weak transcription	Osteobl	bone
27	chr10:4878800-4891800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr10:4878800-4891800	Weak transcription	Fetal Kidney	kidney
29	chr10:4879200-4891600	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:4879400-4891800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr10:4879800-4891800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:4879800-4891800	Weak transcription	Lung	lung
33	chr10:4880000-4890000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:4880000-4890400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:4880000-4891800	Weak transcription	Fetal Lung	lung
36	chr10:4880000-4891800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:4880200-4891400	Weak transcription	Fetal Intestine Small	intestine
38	chr10:4880200-4894400	Weak transcription	Brain Germinal Matrix	brain
39	chr10:4880600-4891600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr10:4880800-4891800	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr10:4881200-4889000	Weak transcription	K562	blood
42	chr10:4881200-4891800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:4881400-4886200	Strong transcription	Fetal Muscle Trunk	muscle
44	chr10:4881800-4886600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:4882000-4888600	Strong transcription	Fetal Stomach	stomach
46	chr10:4882000-4889400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr10:4882800-4886200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:4883400-4886200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr10:4883600-4886000	Strong transcription	Aorta	Aorta
50	chr10:4883600-4886600	Strong transcription	Primary T cells from cord blood	blood

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