Variant report

Variant	rs10905634
Chromosome Location	chr10:6067303-6067304
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11256369	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11256433	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11256456	0.87[AMR][1000 genomes]
rs12722513	0.85[AMR][1000 genomes]
rs2031229	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2076846	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4747845	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4749920	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4749921	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7899538	0.88[ASN][1000 genomes]
rs7920674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv525927	chr10:6059898-6078079	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6057400-6068600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:6057800-6069600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr10:6057800-6069800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:6058000-6068600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:6059400-6068800	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr10:6060400-6070000	Weak transcription	Lung	lung
7	chr10:6060800-6075800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:6061200-6070000	Weak transcription	Spleen	Spleen
9	chr10:6062800-6067800	Strong transcription	Primary B cells from peripheral blood	blood
10	chr10:6063000-6067400	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr10:6063000-6068400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr10:6066400-6067600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr10:6066600-6079600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:6066800-6069200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:6066800-6069200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:6066800-6078000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr10:6067000-6069600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:6067000-6070000	Weak transcription	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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