Variant report

Variant	rs7899538
Chromosome Location	chr10:6059898-6059899
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6059382..6061395-chr10:6068804..6071571,2	MCF-7	breast:
2	chr10:6059419..6064322-chr10:6065224..6067534,4	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10905634	0.88[ASN][1000 genomes]
rs1107345	0.82[YRI][hapmap]
rs11256369	0.90[ASN][1000 genomes]
rs2031229	0.83[CHB][hapmap];0.85[CHD][hapmap];0.90[ASN][1000 genomes]
rs2076846	0.82[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs2386841	0.89[GIH][hapmap]
rs7920674	0.89[ASN][1000 genomes]
rs942201	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	esv3349435	chr10:6059346-6062944	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv525927	chr10:6059898-6078079	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6056200-6061000	Weak transcription	K562	blood
2	chr10:6056800-6060400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr10:6057000-6066000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:6057200-6060600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr10:6057400-6068600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:6057600-6060400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr10:6057600-6062800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:6057800-6064400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:6057800-6069600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr10:6057800-6069800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:6058000-6068600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:6058400-6060000	Weak transcription	Fetal Thymus	thymus
13	chr10:6058400-6062800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:6058600-6063200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:6059000-6060600	Enhancers	Duodenum Mucosa	Duodenum
16	chr10:6059000-6060800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr10:6059200-6060200	Enhancers	Fetal Intestine Small	intestine
18	chr10:6059200-6060400	Enhancers	Colonic Mucosa	Colon
19	chr10:6059200-6060400	Enhancers	Lung	lung
20	chr10:6059200-6060400	Enhancers	Small Intestine	intestine
21	chr10:6059400-6061000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr10:6059400-6063000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:6059400-6068800	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr10:6059800-6060200	Strong transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:6059800-6060600	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr10:6059800-6060800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr10:6059800-6060800	Enhancers	Placenta	Placenta
28	chr10:6059800-6061000	Enhancers	Stomach Mucosa	stomach

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