Variant report

Variant	rs10911528
Chromosome Location	chr1:184179862-184179863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184175834..184177467-chr1:184179688..184182086,2	K562	blood:
2	chr1:184173763..184175918-chr1:184179774..184182386,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10494577	0.82[ASN][1000 genomes]
rs10911521	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10911523	0.94[EUR][1000 genomes]
rs10911529	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10911541	0.82[ASN][1000 genomes]
rs11802235	0.93[ASN][1000 genomes]
rs11810038	0.83[ASN][1000 genomes]
rs12119073	0.82[ASN][1000 genomes]
rs12119930	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12119989	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12129040	0.92[EUR][1000 genomes]
rs12132917	0.82[EUR][1000 genomes]
rs12136090	0.95[EUR][1000 genomes]
rs12401732	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12402004	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12402028	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12403264	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12408100	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12746749	0.82[ASN][1000 genomes]
rs12756256	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1409808	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1409810	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1854085	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2161989	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2194700	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2378818	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2378820	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34301155	0.95[EUR][1000 genomes]
rs34306471	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34518379	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36086128	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4650658	0.93[ASN][1000 genomes]
rs58294748	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6660720	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6670049	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6678597	0.85[ASN][1000 genomes]
rs6694958	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6696567	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6697294	0.95[EUR][1000 genomes]
rs7518664	0.95[EUR][1000 genomes]
rs890065	0.82[ASN][1000 genomes]
rs929942	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9650990	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs986595	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184162600-184191400	Weak transcription	Right Ventricle	heart
2	chr1:184169200-184187600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:184178000-184180000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:184178800-184180200	Enhancers	Fetal Heart	heart
5	chr1:184179000-184180200	Enhancers	NHDF-Ad	bronchial
6	chr1:184179000-184181800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:184179200-184180000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:184179200-184181000	Weak transcription	Spleen	Spleen
9	chr1:184179400-184181800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:184179400-184181800	Weak transcription	Right Atrium	heart
11	chr1:184179400-184183200	Weak transcription	Gastric	stomach
12	chr1:184179400-184191800	Weak transcription	Fetal Kidney	kidney
13	chr1:184179600-184180000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:184179600-184180000	Weak transcription	Fetal Brain Male	brain
15	chr1:184179600-184181800	Weak transcription	Pancreas	Pancrea
16	chr1:184179600-184181800	Weak transcription	Osteobl	bone
17	chr1:184179600-184182200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:184179600-184187600	Weak transcription	Fetal Brain Female	brain
19	chr1:184179600-184191600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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