Variant report

Variant	rs6670049
Chromosome Location	chr1:184186542-184186543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184127775..184130577-chr1:184186407..184188263,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1024298	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1024299	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1024300	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10494577	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10911521	0.80[ASN][1000 genomes]
rs10911523	0.84[EUR][1000 genomes]
rs10911528	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10911529	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911541	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11802235	0.81[ASN][1000 genomes]
rs12117567	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12119073	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12119930	0.80[ASN][1000 genomes]
rs12119989	0.80[ASN][1000 genomes]
rs12129040	0.82[EUR][1000 genomes]
rs12132917	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12136090	0.85[EUR][1000 genomes]
rs12401350	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12401363	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12401732	0.80[ASN][1000 genomes]
rs12402004	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12402028	0.80[ASN][1000 genomes]
rs12402670	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12403264	0.80[ASN][1000 genomes]
rs12403673	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12408100	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12726078	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12729638	1.00[CEU][hapmap]
rs12742417	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12746749	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12756256	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1409808	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1409810	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1854085	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1930291	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2161986	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2161989	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194700	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2378818	0.80[ASN][1000 genomes]
rs2378820	0.80[ASN][1000 genomes]
rs2378840	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34301155	0.85[EUR][1000 genomes]
rs34306471	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34518379	0.80[ASN][1000 genomes]
rs35861687	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36020636	0.83[EUR][1000 genomes]
rs36086128	0.80[ASN][1000 genomes]
rs4263963	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4650658	0.81[ASN][1000 genomes]
rs4651196	0.83[EUR][1000 genomes]
rs57757593	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58294748	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6660720	0.80[ASN][1000 genomes]
rs6690614	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6694958	0.80[ASN][1000 genomes]
rs6697294	0.83[EUR][1000 genomes]
rs7518664	0.85[EUR][1000 genomes]
rs7529843	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs890065	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs929942	0.80[ASN][1000 genomes]
rs9650990	0.80[ASN][1000 genomes]
rs984419	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs986595	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184162600-184191400	Weak transcription	Right Ventricle	heart
2	chr1:184169200-184187600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:184179400-184191800	Weak transcription	Fetal Kidney	kidney
4	chr1:184179600-184187600	Weak transcription	Fetal Brain Female	brain
5	chr1:184179600-184191600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:184180200-184187400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:184180200-184194400	Weak transcription	Fetal Brain Male	brain
8	chr1:184182200-184187400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:184182400-184189400	Weak transcription	Spleen	Spleen
10	chr1:184182400-184193400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:184182400-184195400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:184182600-184187600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:184182600-184187600	Weak transcription	NHDF-Ad	bronchial
14	chr1:184182600-184192000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:184183400-184191400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:184185200-184187200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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