Variant report

Variant	rs1409808
Chromosome Location	chr1:184189782-184189783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1024298	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1024299	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1024300	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10494577	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10911523	0.82[EUR][1000 genomes]
rs10911528	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10911529	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10911541	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12079081	0.80[EUR][1000 genomes]
rs12117567	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12119073	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12119930	0.93[CEU][hapmap];0.84[TSI][hapmap]
rs12119989	0.93[CEU][hapmap]
rs12129040	0.81[EUR][1000 genomes]
rs12132917	0.97[EUR][1000 genomes]
rs12136090	0.84[EUR][1000 genomes]
rs12142293	0.93[CEU][hapmap];0.84[TSI][hapmap]
rs12401350	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12401363	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12402004	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12402670	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12403673	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12408100	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12726078	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12742417	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12746749	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12756256	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1327142	0.93[CEU][hapmap];0.84[TSI][hapmap]
rs1409810	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1854085	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1930291	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2161986	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2161989	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2194700	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2378840	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34301155	0.84[EUR][1000 genomes]
rs34306471	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35861687	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36020636	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4263963	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4651179	0.93[CEU][hapmap];0.84[TSI][hapmap]
rs4651196	0.82[EUR][1000 genomes]
rs57757593	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58294748	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6670049	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6690614	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6697294	0.83[EUR][1000 genomes]
rs7518664	0.84[EUR][1000 genomes]
rs7529843	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs890065	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9650990	0.93[CEU][hapmap];0.84[TSI][hapmap]
rs984419	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs986595	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184162600-184191400	Weak transcription	Right Ventricle	heart
2	chr1:184179400-184191800	Weak transcription	Fetal Kidney	kidney
3	chr1:184179600-184191600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:184180200-184194400	Weak transcription	Fetal Brain Male	brain
5	chr1:184182400-184193400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:184182400-184195400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:184182600-184192000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:184183400-184191400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:184188200-184191600	Weak transcription	Fetal Brain Female	brain
10	chr1:184188200-184191800	Weak transcription	Brain Substantia Nigra	brain
11	chr1:184188200-184192000	Weak transcription	Brain Anterior Caudate	brain
12	chr1:184188600-184191800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:184188600-184191800	Weak transcription	Osteobl	bone
14	chr1:184189000-184191600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:184189000-184191600	Weak transcription	NHDF-Ad	bronchial
16	chr1:184189600-184189800	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links