Variant report

Variant	rs10911550
Chromosome Location	chr1:184241245-184241246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184239465..184241349-chr1:184252321..184254869,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10047215	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10737250	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10797943	0.84[ASN][1000 genomes]
rs10797951	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10797952	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10797953	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911545	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10911546	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10911547	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10911548	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911549	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911551	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911553	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10911554	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11576933	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11579542	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11802851	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12021761	0.80[ASN][1000 genomes]
rs12028040	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12046452	0.85[ASN][1000 genomes]
rs12124041	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16822656	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16822659	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1930285	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1930290	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57882451	0.80[ASN][1000 genomes]
rs6424941	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6424942	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6424943	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6661497	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6666447	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6678439	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6684740	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6693421	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6696916	0.85[ASN][1000 genomes]
rs6697326	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6697577	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72735632	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7355183	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7517993	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7525134	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7530243	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7543622	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs957558	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184230600-184241600	Weak transcription	NHLF	lung
2	chr1:184239600-184242200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:184239800-184241600	Enhancers	NH-A	brain
4	chr1:184239800-184242200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:184239800-184242200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:184239800-184242200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:184239800-184242200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:184239800-184242200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:184239800-184243200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:184240000-184241600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:184240000-184241800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:184240000-184243000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr1:184240200-184241400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:184240200-184241400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr1:184240200-184241400	Weak transcription	Osteobl	bone
16	chr1:184240200-184242000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:184240200-184242200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:184240600-184241600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr1:184240600-184241800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr1:184240800-184241800	Weak transcription	HSMMtube	muscle
21	chr1:184241000-184242000	Weak transcription	Fetal Heart	heart
22	chr1:184241000-184242800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:184241200-184241600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr1:184241200-184241600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:184241200-184242200	Enhancers	HSMM	muscle
26	chr1:184241200-184243000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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