Variant report

Variant	rs10797952
Chromosome Location	chr1:184239802-184239803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184239465..184241349-chr1:184252321..184254869,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10047215	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10737250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10797943	0.85[ASN][1000 genomes]
rs10797951	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10797953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911545	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911546	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911547	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911548	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911550	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911553	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911554	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911555	0.80[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs11576933	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11579542	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11585071	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs11802851	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12021761	0.82[ASN][1000 genomes]
rs12028040	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12046452	0.86[ASN][1000 genomes]
rs12124041	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128341	0.81[ASN][1000 genomes]
rs16822656	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16822659	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1930285	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1930290	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4428848	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4651184	0.81[ASN][1000 genomes]
rs4651185	0.81[ASN][1000 genomes]
rs4651200	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs57882451	0.81[ASN][1000 genomes]
rs6424941	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6424942	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6424943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6661497	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6666447	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66781583	0.81[ASN][1000 genomes]
rs6678439	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6684045	0.81[ASN][1000 genomes]
rs6684740	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6691210	0.81[ASN][1000 genomes]
rs6693421	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6696916	0.86[ASN][1000 genomes]
rs6697326	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6697577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735619	0.81[ASN][1000 genomes]
rs72735632	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7355183	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7517993	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7525134	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7530243	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7543622	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs932993	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs957558	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs963234	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs9787399	0.80[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap]
rs997343	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184230600-184241600	Weak transcription	NHLF	lung
2	chr1:184239400-184241000	Enhancers	Fetal Heart	heart
3	chr1:184239600-184240200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:184239600-184240200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr1:184239600-184240200	Enhancers	Osteobl	bone
6	chr1:184239600-184240400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:184239600-184240800	Enhancers	HSMM	muscle
8	chr1:184239600-184240800	Enhancers	HSMMtube	muscle
9	chr1:184239600-184242200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:184239800-184240000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:184239800-184240000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:184239800-184240000	Enhancers	Psoas Muscle	Psoas
13	chr1:184239800-184240200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:184239800-184240200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:184239800-184240200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:184239800-184240200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:184239800-184240200	Enhancers	NHDF-Ad	bronchial
18	chr1:184239800-184240800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:184239800-184241200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr1:184239800-184241200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr1:184239800-184241600	Enhancers	NH-A	brain
22	chr1:184239800-184242200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr1:184239800-184242200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:184239800-184242200	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr1:184239800-184242200	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr1:184239800-184242200	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr1:184239800-184243200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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