Variant report

Variant	rs66781583
Chromosome Location	chr1:184184270-184184271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10047215	0.81[ASN][1000 genomes]
rs10737250	0.81[ASN][1000 genomes]
rs10752934	0.88[ASN][1000 genomes]
rs1078926	0.88[ASN][1000 genomes]
rs10797943	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10797951	0.81[ASN][1000 genomes]
rs10797952	0.81[ASN][1000 genomes]
rs10797953	0.81[ASN][1000 genomes]
rs10911545	0.82[ASN][1000 genomes]
rs10911546	0.82[ASN][1000 genomes]
rs10911547	0.82[ASN][1000 genomes]
rs10911548	0.81[ASN][1000 genomes]
rs10911549	0.81[ASN][1000 genomes]
rs10911551	0.81[ASN][1000 genomes]
rs11582627	0.87[ASN][1000 genomes]
rs11802851	0.83[ASN][1000 genomes]
rs12028040	0.81[ASN][1000 genomes]
rs12046452	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12124041	0.81[ASN][1000 genomes]
rs12128341	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12136030	0.89[ASN][1000 genomes]
rs16822656	0.88[ASN][1000 genomes]
rs16822659	0.88[ASN][1000 genomes]
rs17574056	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1930285	0.87[ASN][1000 genomes]
rs2042556	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4651184	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57882451	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60072887	0.88[ASN][1000 genomes]
rs6424941	0.81[ASN][1000 genomes]
rs6424942	0.81[ASN][1000 genomes]
rs6424943	0.81[ASN][1000 genomes]
rs6661497	0.93[ASN][1000 genomes]
rs6678439	0.89[ASN][1000 genomes]
rs6684045	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6691210	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693421	0.81[ASN][1000 genomes]
rs6696916	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6697577	0.81[ASN][1000 genomes]
rs67878484	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72735619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735632	0.82[ASN][1000 genomes]
rs7355183	0.84[ASN][1000 genomes]
rs7517993	0.90[ASN][1000 genomes]
rs7525134	0.82[ASN][1000 genomes]
rs7543622	0.83[ASN][1000 genomes]
rs957558	0.82[ASN][1000 genomes]
rs997343	0.97[ASN][1000 genomes]
rs997568	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184162600-184191400	Weak transcription	Right Ventricle	heart
2	chr1:184169200-184187600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:184179400-184191800	Weak transcription	Fetal Kidney	kidney
4	chr1:184179600-184187600	Weak transcription	Fetal Brain Female	brain
5	chr1:184179600-184191600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:184180200-184187400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:184180200-184194400	Weak transcription	Fetal Brain Male	brain
8	chr1:184182200-184187400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:184182400-184184800	Weak transcription	Pancreas	Pancrea
10	chr1:184182400-184189400	Weak transcription	Spleen	Spleen
11	chr1:184182400-184193400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:184182400-184195400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:184182600-184185000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:184182600-184187600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:184182600-184187600	Weak transcription	NHDF-Ad	bronchial
16	chr1:184182600-184192000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:184183400-184191400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:184184000-184185000	Enhancers	Fetal Heart	heart

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