Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184173763..184175918-chr1:184179774..184182386,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10752934	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1078926	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10797943	0.82[ASN][1000 genomes]
rs10911525	0.81[ASN][1000 genomes]
rs11582627	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12033327	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12046452	0.84[ASN][1000 genomes]
rs12123933	0.91[ASN][1000 genomes]
rs12128341	0.88[ASN][1000 genomes]
rs12136030	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17574056	0.90[ASN][1000 genomes]
rs1887295	0.91[ASN][1000 genomes]
rs2025808	0.90[ASN][1000 genomes]
rs2042556	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4651184	0.88[ASN][1000 genomes]
rs4651185	0.88[ASN][1000 genomes]
rs57882451	0.80[ASN][1000 genomes]
rs6661497	0.84[ASN][1000 genomes]
rs66781583	0.88[ASN][1000 genomes]
rs6684045	0.90[ASN][1000 genomes]
rs6690187	0.91[ASN][1000 genomes]
rs6691210	0.88[ASN][1000 genomes]
rs6696916	0.84[ASN][1000 genomes]
rs67878484	0.89[ASN][1000 genomes]
rs72735619	0.88[ASN][1000 genomes]
rs7517993	0.81[ASN][1000 genomes]
rs7527771	0.91[ASN][1000 genomes]
rs997343	0.90[ASN][1000 genomes]
rs997568	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184162600-184191400	Weak transcription	Right Ventricle	heart
2	chr1:184169200-184187600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:184171600-184179000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:184171600-184179200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:184173000-184174800	Weak transcription	Fetal Heart	heart
6	chr1:184174600-184174800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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