Variant report

Variant	rs17574056
Chromosome Location	chr1:184181694-184181695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:184170545..184172702-chr1:184181137..184183319,2	MCF-7	breast:
2	chr1:184181152..184184064-chr1:184184716..184186334,2	MCF-7	breast:
3	chr1:184175834..184177467-chr1:184179688..184182086,2	K562	blood:
4	chr1:184173763..184175918-chr1:184179774..184182386,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10752934	0.90[ASN][1000 genomes]
rs1078926	0.90[ASN][1000 genomes]
rs10797943	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10911555	0.85[CHB][hapmap]
rs11582627	0.89[ASN][1000 genomes]
rs12046452	0.90[ASN][1000 genomes]
rs12123933	0.81[ASN][1000 genomes]
rs12128341	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12136030	0.91[ASN][1000 genomes]
rs16822656	0.84[ASN][1000 genomes]
rs16822659	0.84[ASN][1000 genomes]
rs1887295	0.81[ASN][1000 genomes]
rs1930285	0.84[ASN][1000 genomes]
rs2025808	0.81[ASN][1000 genomes]
rs2042556	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4428848	0.85[CHB][hapmap]
rs4651184	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4651185	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4651200	0.85[CHB][hapmap]
rs57882451	0.87[ASN][1000 genomes]
rs60072887	0.90[ASN][1000 genomes]
rs6661497	0.90[ASN][1000 genomes]
rs66781583	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6678439	0.86[ASN][1000 genomes]
rs6684045	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6690187	0.81[ASN][1000 genomes]
rs6691210	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6696916	0.90[ASN][1000 genomes]
rs67878484	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72735619	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7355183	0.81[ASN][1000 genomes]
rs7517993	0.86[ASN][1000 genomes]
rs7527771	0.81[ASN][1000 genomes]
rs7530243	0.80[CHB][hapmap]
rs932993	0.80[CHB][hapmap]
rs963234	0.85[CHB][hapmap]
rs9787399	0.85[CHB][hapmap]
rs997343	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs997568	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184162600-184191400	Weak transcription	Right Ventricle	heart
2	chr1:184169200-184187600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:184179000-184181800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:184179400-184181800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:184179400-184181800	Weak transcription	Right Atrium	heart
6	chr1:184179400-184183200	Weak transcription	Gastric	stomach
7	chr1:184179400-184191800	Weak transcription	Fetal Kidney	kidney
8	chr1:184179600-184181800	Weak transcription	Pancreas	Pancrea
9	chr1:184179600-184181800	Weak transcription	Osteobl	bone
10	chr1:184179600-184182200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:184179600-184187600	Weak transcription	Fetal Brain Female	brain
12	chr1:184179600-184191600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:184180000-184182000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:184180200-184181800	Weak transcription	NHDF-Ad	bronchial
15	chr1:184180200-184182000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:184180200-184182200	Weak transcription	Fetal Heart	heart
17	chr1:184180200-184187400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:184180200-184194400	Weak transcription	Fetal Brain Male	brain
19	chr1:184181600-184182400	Enhancers	Spleen	Spleen

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