Variant report

Variant	rs10911545
Chromosome Location	chr1:184224920-184224921
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184223949..184226595-chr1:184227169..184229725,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10047215	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10737250	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10797943	0.86[ASN][1000 genomes]
rs10797951	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10797952	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10797953	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911546	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911547	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911548	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911549	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911550	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10911551	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911553	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10911554	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10911555	0.81[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap]
rs11576933	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11579542	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11585071	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs11802851	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12021761	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12028040	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12046452	0.87[ASN][1000 genomes]
rs12124041	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12128341	0.82[ASN][1000 genomes]
rs16822656	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16822659	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1930285	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1930290	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4428848	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs4651184	0.82[ASN][1000 genomes]
rs4651185	0.82[ASN][1000 genomes]
rs4651200	0.92[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap]
rs57882451	0.82[ASN][1000 genomes]
rs6424941	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6424942	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6424943	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6661497	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6666447	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66781583	0.82[ASN][1000 genomes]
rs6678439	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6684045	0.82[ASN][1000 genomes]
rs6684740	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6691210	0.82[ASN][1000 genomes]
rs6693421	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6696916	0.87[ASN][1000 genomes]
rs6697577	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72735619	0.82[ASN][1000 genomes]
rs72735632	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7355183	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7517993	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7525134	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7530243	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7543622	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs932993	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs957558	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs963234	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs9787399	0.81[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap]
rs997343	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184212200-184229400	Weak transcription	NHLF	lung
2	chr1:184223200-184225400	Enhancers	HSMMtube	muscle
3	chr1:184224000-184225400	Enhancers	HSMM	muscle
4	chr1:184224000-184225600	Enhancers	Ovary	ovary
5	chr1:184224200-184225400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:184224200-184225400	Enhancers	Fetal Muscle Leg	muscle
7	chr1:184224200-184229000	Weak transcription	Spleen	Spleen
8	chr1:184224400-184233000	Weak transcription	Fetal Heart	heart
9	chr1:184224800-184225200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:184224800-184225400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr1:184224800-184225800	Genic enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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