Variant report

Variant	rs10911683
Chromosome Location	chr1:171093095-171093096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10797878	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10911664	0.84[ASN][1000 genomes]
rs1157459	0.83[ASN][1000 genomes]
rs12072547	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12072717	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12074448	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12080672	0.82[ASN][1000 genomes]
rs12086786	0.82[ASN][1000 genomes]
rs12089338	0.82[ASN][1000 genomes]
rs16864094	0.83[ASN][1000 genomes]
rs2204791	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2205725	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2235192	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2235194	0.83[ASN][1000 genomes]
rs2281004	0.83[ASN][1000 genomes]
rs28363597	0.81[ASN][1000 genomes]
rs34431675	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56672667	0.82[ASN][1000 genomes]
rs60447684	0.82[ASN][1000 genomes]
rs61420043	0.84[ASN][1000 genomes]
rs66880604	0.83[ASN][1000 genomes]
rs67495591	0.83[ASN][1000 genomes]
rs68071659	0.83[ASN][1000 genomes]
rs72712662	0.83[ASN][1000 genomes]
rs742057	0.82[ASN][1000 genomes]
rs742058	0.82[ASN][1000 genomes]
rs9970391	0.82[ASN][1000 genomes]
rs9970392	0.82[ASN][1000 genomes]
rs9970495	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1005902	chr1:171036690-171254916	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535203	chr1:171036690-171254916	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171086600-171095800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:171089600-171095800	Weak transcription	NHLF	lung
3	chr1:171091000-171098200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:171091400-171093800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr1:171091600-171093600	Enhancers	Fetal Heart	heart
6	chr1:171091600-171109000	Weak transcription	Right Ventricle	heart
7	chr1:171092600-171095800	Weak transcription	Fetal Lung	lung
8	chr1:171092600-171097200	Weak transcription	Aorta	Aorta
9	chr1:171092600-171097200	Weak transcription	Lung	lung
10	chr1:171092800-171095400	Weak transcription	Adipose Nuclei	Adipose
11	chr1:171092800-171095400	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:171092800-171095800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:171092800-171095800	Weak transcription	Right Atrium	heart
14	chr1:171092800-171097200	Weak transcription	Left Ventricle	heart
15	chr1:171092800-171097400	Weak transcription	Pancreas	Pancrea

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