Variant report

Variant	rs12080672
Chromosome Location	chr1:171087715-171087716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10911664	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10911683	0.82[ASN][1000 genomes]
rs1157459	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12086786	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12089338	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16864094	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1800822	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1983550	0.84[ASN][1000 genomes]
rs2235194	0.94[ASN][1000 genomes]
rs2281002	0.84[ASN][1000 genomes]
rs2281004	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs28363528	0.94[EUR][1000 genomes]
rs28363533	0.84[ASN][1000 genomes]
rs28363535	0.84[ASN][1000 genomes]
rs28363557	0.84[ASN][1000 genomes]
rs28363560	0.84[ASN][1000 genomes]
rs28363597	0.99[ASN][1000 genomes]
rs28745584	0.84[EUR][1000 genomes]
rs56672667	1.00[ASN][1000 genomes]
rs56809838	0.82[ASN][1000 genomes]
rs60447684	1.00[ASN][1000 genomes]
rs61420043	0.96[ASN][1000 genomes]
rs66880604	0.94[ASN][1000 genomes]
rs66963071	0.84[ASN][1000 genomes]
rs67495591	0.94[ASN][1000 genomes]
rs68071659	0.94[ASN][1000 genomes]
rs72712662	0.94[ASN][1000 genomes]
rs742057	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs742058	0.98[ASN][1000 genomes]
rs909529	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs909532	1.00[EUR][1000 genomes]
rs9970391	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9970392	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9970495	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1005902	chr1:171036690-171254916	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535203	chr1:171036690-171254916	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171082200-171087800	Genic enhancers	Liver	Liver
2	chr1:171084200-171092200	Weak transcription	Small Intestine	intestine
3	chr1:171085600-171091400	Weak transcription	Adipose Nuclei	Adipose
4	chr1:171086600-171091400	Weak transcription	Aorta	Aorta
5	chr1:171086600-171095800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:171086800-171088600	Weak transcription	Fetal Lung	lung
7	chr1:171086800-171089000	Weak transcription	NHLF	lung

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