Variant report

Variant	rs9970391
Chromosome Location	chr1:171088623-171088624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10911664	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10911683	0.82[ASN][1000 genomes]
rs1157459	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12080672	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12086786	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12089338	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16864094	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1800822	0.84[ASN][1000 genomes]
rs1983550	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2235194	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2281002	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2281004	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28363533	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28363535	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28363557	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28363560	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28363597	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4140653	0.83[EUR][1000 genomes]
rs56672667	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56809838	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60447684	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61420043	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66880604	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66963071	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67495591	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68071659	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72712662	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs742057	0.98[ASN][1000 genomes]
rs742058	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs909529	0.84[ASN][1000 genomes]
rs9970392	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9970495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1005902	chr1:171036690-171254916	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535203	chr1:171036690-171254916	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171084200-171092200	Weak transcription	Small Intestine	intestine
2	chr1:171085600-171091400	Weak transcription	Adipose Nuclei	Adipose
3	chr1:171086600-171091400	Weak transcription	Aorta	Aorta
4	chr1:171086600-171095800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:171086800-171089000	Weak transcription	NHLF	lung
6	chr1:171088400-171089400	Enhancers	Liver	Liver
7	chr1:171088600-171089200	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links