Variant report

Variant	rs10911949
Chromosome Location	chr1:186863629-186863630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10737274	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10752983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798068	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10798069	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10798070	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10798075	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10911951	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911954	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10911955	0.91[ASN][1000 genomes]
rs10911956	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10911958	0.94[ASN][1000 genomes]
rs12032535	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12097804	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12720634	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1569479	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1569480	0.80[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs1977064	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2207209	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2383554	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2891258	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2891259	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs33958012	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4651336	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs4651337	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4651338	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61810976	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61810977	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6662687	0.81[CEU][hapmap];0.95[CHB][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6672324	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6682481	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6688292	0.93[ASN][1000 genomes]
rs6697145	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.92[MKK][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs726706	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7542180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7542659	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9803785	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9804084	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186839200-186884800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr1:186850800-186865400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:186852800-186865600	Weak transcription	NHDF-Ad	bronchial
4	chr1:186854000-186869400	Weak transcription	Pancreas	Pancrea
5	chr1:186854000-186897200	Weak transcription	Lung	lung
6	chr1:186854400-186880000	Weak transcription	Fetal Intestine Small	intestine
7	chr1:186854800-186868000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:186855600-186864000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr1:186856400-186864000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:186857200-186864400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:186857200-186864800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:186857200-186865400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:186857600-186865600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:186857800-186864800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:186861000-186864200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:186861600-186873000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr1:186862200-186872400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr1:186862400-186864600	Strong transcription	Hela-S3	cervix
19	chr1:186862400-186865400	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:186862600-186864600	Weak transcription	NHEK	skin
21	chr1:186862600-186865400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:186862600-186865400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:186862600-186865400	Weak transcription	Osteobl	bone
24	chr1:186862800-186864600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:186863000-186864800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:186863400-186865000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:186863400-186872000	Strong transcription	Primary monocytes fromperipheralblood	blood

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