Variant report

Variant	rs10912960
Chromosome Location	chr1:175304971-175304972
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11800824	0.85[ASN][1000 genomes]
rs11806265	0.95[ASN][1000 genomes]
rs11806798	0.86[AFR][1000 genomes]
rs12059155	0.95[ASN][1000 genomes]
rs12065335	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12067127	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12082077	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16848188	0.95[ASN][1000 genomes]
rs35421365	1.00[EUR][1000 genomes]
rs58179512	1.00[EUR][1000 genomes]
rs9283389	0.95[ASN][1000 genomes]
rs9286908	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv831948	chr1:175229631-175407303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175283200-175320600	Weak transcription	Brain Germinal Matrix	brain
2	chr1:175284200-175343000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:175288800-175343200	Weak transcription	Brain Angular Gyrus	brain
4	chr1:175288800-175343200	Weak transcription	Brain Substantia Nigra	brain
5	chr1:175289000-175305000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:175302000-175307200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:175303200-175307600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:175304800-175305000	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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