Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175303753..175305978-chr1:175309123..175310955,2	MCF-7	breast:
2	chr1:175302709..175304526-chr1:175306793..175308538,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TNN-2	chr1:175304425-175304595	ENSG00000260990.1

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10489323	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10912960	0.95[ASN][1000 genomes]
rs11800824	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11800933	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11806265	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12065335	0.95[ASN][1000 genomes]
rs12067127	0.95[ASN][1000 genomes]
rs12082077	0.95[ASN][1000 genomes]
rs16848188	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16848218	0.93[EUR][1000 genomes]
rs17375910	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1989499	0.90[EUR][1000 genomes]
rs61391686	0.92[EUR][1000 genomes]
rs61806379	0.93[EUR][1000 genomes]
rs61806380	0.94[EUR][1000 genomes]
rs726030	0.89[EUR][1000 genomes]
rs7513605	0.93[EUR][1000 genomes]
rs7551235	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7553041	0.91[EUR][1000 genomes]
rs875325	0.86[EUR][1000 genomes]
rs875326	0.88[EUR][1000 genomes]
rs9283389	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9286908	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv831948	chr1:175229631-175407303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175283200-175320600	Weak transcription	Brain Germinal Matrix	brain
2	chr1:175284200-175343000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:175288800-175343200	Weak transcription	Brain Angular Gyrus	brain
4	chr1:175288800-175343200	Weak transcription	Brain Substantia Nigra	brain
5	chr1:175289000-175305000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:175298400-175304600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:175301800-175304600	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:175302000-175307200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:175303200-175307600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:175304400-175304600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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