Variant report

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:175123305..175125739-chr1:175288454..175289454,12	K562	blood:
2	chr1:175253882..175254580-chr1:175288435..175289596,5	MCF-7	breast:
3	chr1:175123723..175124795-chr1:175288482..175289411,8	MCF-7	breast:
4	chr1:175120876..175122178-chr1:175288064..175289820,17	K562	blood:
5	chr1:175159425..175162101-chr1:175288734..175290798,2	MCF-7	breast:
6	chr1:175122415..175124453-chr1:175287912..175290526,2	MCF-7	breast:
7	chr1:175122852..175126073-chr1:175286636..175289998,3	MCF-7	breast:
8	chr1:174998565..174999544-chr1:175288462..175289441,6	K562	blood:
9	chr1:175120882..175122261-chr1:175288506..175289747,9	MCF-7	breast:
10	chr1:175190605..175191559-chr1:175288637..175289409,2	MCF-7	breast:
11	chr1:175123069..175124833-chr1:175288206..175289868,26	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TNR-4	chr1:175284333-175289747	NONHSAT007754

No data

Variant related genes	Relation type
ENSG00000235750	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10489323	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11800824	0.94[EUR][1000 genomes]
rs11800933	0.89[EUR][1000 genomes]
rs11806265	0.89[EUR][1000 genomes]
rs12059155	0.93[EUR][1000 genomes]
rs16848188	0.94[EUR][1000 genomes]
rs16848218	0.88[EUR][1000 genomes]
rs17375910	0.89[EUR][1000 genomes]
rs1989499	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58179512	0.95[ASN][1000 genomes]
rs61391686	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61806379	0.88[EUR][1000 genomes]
rs61806380	0.87[EUR][1000 genomes]
rs726030	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551235	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553041	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs875325	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs875326	0.94[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9283389	0.92[EUR][1000 genomes]
rs9286908	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv831948	chr1:175229631-175407303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175283200-175320600	Weak transcription	Brain Germinal Matrix	brain
2	chr1:175284200-175343000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:175286600-175289400	Enhancers	Pancreas	Pancrea
4	chr1:175287400-175292400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr1:175287800-175289400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:175288000-175291400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:175288400-175289400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr1:175288400-175289800	Enhancers	Primary T cells from cord blood	blood
9	chr1:175288600-175289400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr1:175288600-175289400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:175288800-175290800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr1:175288800-175343200	Weak transcription	Brain Angular Gyrus	brain
13	chr1:175288800-175343200	Weak transcription	Brain Substantia Nigra	brain
14	chr1:175289000-175289800	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr1:175289000-175290600	Weak transcription	Placenta	Placenta
16	chr1:175289000-175292000	Weak transcription	Adipose Nuclei	Adipose
17	chr1:175289000-175305000	Weak transcription	Brain Cingulate Gyrus	brain

Quick Search: