Variant report

Variant	rs58179512
Chromosome Location	chr1:175299073-175299074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10489323	0.95[ASN][1000 genomes]
rs10912960	1.00[EUR][1000 genomes]
rs12065335	1.00[EUR][1000 genomes]
rs12067127	1.00[EUR][1000 genomes]
rs12082077	1.00[EUR][1000 genomes]
rs1989499	0.95[ASN][1000 genomes]
rs35421365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61391686	0.95[ASN][1000 genomes]
rs726030	0.95[ASN][1000 genomes]
rs7513605	0.95[ASN][1000 genomes]
rs7551235	0.95[ASN][1000 genomes]
rs7553041	0.95[ASN][1000 genomes]
rs875325	0.90[ASN][1000 genomes]
rs875326	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv831948	chr1:175229631-175407303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175283200-175320600	Weak transcription	Brain Germinal Matrix	brain
2	chr1:175284200-175343000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:175288800-175343200	Weak transcription	Brain Angular Gyrus	brain
4	chr1:175288800-175343200	Weak transcription	Brain Substantia Nigra	brain
5	chr1:175289000-175305000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:175292000-175302800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:175295800-175304400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:175298400-175304600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:175299000-175299400	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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