Variant report

Variant	rs10913586
Chromosome Location	chr1:171717330-171717331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:171716243..171719064-chr1:171724959..171726661,2	K562	blood:
2	chr1:171715364..171718014-chr1:171745246..171747698,2	MCF-7	breast:
3	chr1:171705072..171707837-chr1:171716105..171717838,2	K562	blood:

Variant related genes	Relation type
ENSG00000271459	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10798598	0.86[EUR][1000 genomes]
rs10798599	0.86[EUR][1000 genomes]
rs10798603	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10913508	0.86[EUR][1000 genomes]
rs10913530	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10913559	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11583530	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11805692	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11806314	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12045452	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12096984	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12120152	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12139610	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2073484	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2227229	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4342884	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4468194	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6425400	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6665581	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6668623	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6672082	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6673782	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6674468	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6674688	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6674774	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6682452	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6685742	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6688447	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs763225	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs999685	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv12447	chr1:171556291-171726822	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10913586	VAMP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171712000-171723400	Weak transcription	Lung	lung
2	chr1:171713600-171722200	Weak transcription	NHLF	lung
3	chr1:171713600-171722800	Weak transcription	HMEC	breast
4	chr1:171715600-171720000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr1:171715800-171719800	Weak transcription	Primary monocytes fromperipheralblood	blood

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