Variant report

Variant	rs10914024
Chromosome Location	chr1:180506340-180506341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11484582	1.00[JPT][hapmap]
rs13374665	1.00[JPT][hapmap]
rs2331739	0.82[LWK][hapmap]
rs4651066	0.90[LWK][hapmap];0.84[AFR][1000 genomes]
rs7515052	0.90[LWK][hapmap];0.84[AFR][1000 genomes]
rs7522928	0.84[AFR][1000 genomes]
rs7555087	0.84[AFR][1000 genomes]
rs946633	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv949311	chr1:180438895-180692815	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180491600-180511200	Weak transcription	Psoas Muscle	Psoas
2	chr1:180494400-180508200	Weak transcription	Right Ventricle	heart
3	chr1:180496600-180508000	Weak transcription	Right Atrium	heart
4	chr1:180497800-180511200	Weak transcription	Aorta	Aorta
5	chr1:180500000-180511200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:180502800-180506600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:180503200-180508000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:180503600-180510200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:180504000-180509000	Weak transcription	HMEC	breast
10	chr1:180505200-180506400	Enhancers	Left Ventricle	heart
11	chr1:180506000-180506400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:180506000-180506600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:180506000-180506600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:180506000-180506800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:180506200-180506600	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr1:180506200-180506800	Enhancers	Fetal Heart	heart
17	chr1:180506200-180510000	Weak transcription	K562	blood
18	chr1:180506200-180513200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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