Variant report

Variant	rs10915976
Chromosome Location	chr1:226521979-226521980
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10799348	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10915975	1.00[CEU][hapmap];0.80[CHD][hapmap];0.85[GIH][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11583305	0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs11800726	0.95[ASN][1000 genomes]
rs2089796	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4653723	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4653727	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6662737	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6670767	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7354984	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832770	chr1:226465130-226655512	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10915976	DEGS1	cis	cerebellum	SCAN
rs10915976	OBSCN	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226521200-226523600	Weak transcription	Fetal Lung	lung
2	chr1:226521200-226524800	Weak transcription	K562	blood
3	chr1:226521400-226541000	Weak transcription	Right Atrium	heart
4	chr1:226521600-226523200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:226521600-226525200	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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