Variant report

Variant	rs4653723
Chromosome Location	chr1:226511702-226511703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10799348	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10915975	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10915976	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11583305	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11586721	0.83[AMR][1000 genomes]
rs11800726	0.91[ASN][1000 genomes]
rs2089796	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4653727	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6662737	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6670767	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7354984	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832770	chr1:226465130-226655512	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226507600-226512600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:226509200-226512000	Enhancers	Placenta	Placenta
3	chr1:226510400-226511800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:226511200-226512800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:226511200-226512800	Weak transcription	HMEC	breast
6	chr1:226511600-226512800	Weak transcription	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links