Variant report

Variant	rs6670767
Chromosome Location	chr1:226510566-226510567
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZC3H11A	chr1:226510366-226510613	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:226494236..226498064-chr1:226509717..226512520,4	K562	blood:
2	chr1:226508824..226511232-chr1:226594908..226597099,2	K562	blood:
3	chr1:226499763..226503129-chr1:226508161..226511446,3	K562	blood:
4	chr1:226496166..226498636-chr1:226509217..226510803,2	MCF-7	breast:
5	chr1:226399890..226402578-chr1:226510498..226513395,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10799348	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10915975	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10915976	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11583305	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11586721	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11799818	0.93[ASN][1000 genomes]
rs11805809	0.93[ASN][1000 genomes]
rs2089796	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4653723	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4653727	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58027411	0.94[ASN][1000 genomes]
rs61642967	0.91[ASN][1000 genomes]
rs61836916	0.95[ASN][1000 genomes]
rs66497972	0.84[ASN][1000 genomes]
rs66554885	0.86[ASN][1000 genomes]
rs6662737	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7354984	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832770	chr1:226465130-226655512	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226507600-226512600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:226509200-226512000	Enhancers	Placenta	Placenta
3	chr1:226510400-226511800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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