Variant report

Variant	rs61836916
Chromosome Location	chr1:226517902-226517903
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10915975	0.97[ASN][1000 genomes]
rs11583305	0.92[ASN][1000 genomes]
rs11586721	0.88[ASN][1000 genomes]
rs11799818	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11800726	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11805809	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58027411	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61101869	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61642967	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66497972	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66554885	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6662737	0.95[ASN][1000 genomes]
rs6670767	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832770	chr1:226465130-226655512	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226514800-226520600	Weak transcription	Brain Germinal Matrix	brain
2	chr1:226515400-226520400	Weak transcription	HepG2	liver
3	chr1:226516200-226520600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:226516200-226520800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr1:226516400-226519200	Weak transcription	Placenta	Placenta
6	chr1:226516400-226520600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:226516400-226520600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:226517800-226518200	Enhancers	K562	blood
9	chr1:226517800-226518400	Active TSS	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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