Variant report

Variant	rs58027411
Chromosome Location	chr1:226515196-226515197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10915975	0.96[ASN][1000 genomes]
rs11583305	0.93[ASN][1000 genomes]
rs11586721	0.89[ASN][1000 genomes]
rs11799818	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11800726	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11805809	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61101869	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61642967	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61836916	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66497972	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66554885	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6662737	0.94[ASN][1000 genomes]
rs6670767	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832770	chr1:226465130-226655512	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226512800-226515400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:226512800-226516400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:226514200-226516400	Enhancers	Placenta	Placenta
4	chr1:226514400-226515400	Enhancers	HepG2	liver
5	chr1:226514400-226516400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:226514600-226516200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr1:226514800-226516200	Enhancers	Primary hematopoietic stem cells	blood
8	chr1:226514800-226520600	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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