Variant report

Variant	rs10916042
Chromosome Location	chr1:226989158-226989159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:226989096..226991655-chr1:226992753..226994934,2	MCF-7	breast:
2	chr1:226984451..226988514-chr1:226988953..226993290,5	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10799368	0.90[ASN][1000 genomes]
rs10916039	0.87[ASW][hapmap];0.84[CHB][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap]
rs10916043	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1150895	0.88[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs11590925	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12039247	0.83[ASN][1000 genomes]
rs12044509	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128150	0.83[ASN][1000 genomes]
rs12130758	0.83[ASN][1000 genomes]
rs12131495	0.91[ASN][1000 genomes]
rs12133772	0.90[ASN][1000 genomes]
rs12563993	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12749910	0.83[ASN][1000 genomes]
rs1295645	0.94[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap]
rs1295651	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs17391089	1.00[YRI][hapmap]
rs1800680	1.00[YRI][hapmap]
rs2855563	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap]
rs34020484	0.82[ASN][1000 genomes]
rs34741989	0.92[ASN][1000 genomes]
rs61835655	0.97[ASN][1000 genomes]
rs61835656	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61835658	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61837761	0.91[ASN][1000 genomes]
rs61837762	0.91[ASN][1000 genomes]
rs61837763	0.91[ASN][1000 genomes]
rs6426543	0.92[ASN][1000 genomes]
rs6426545	1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs6426546	0.92[ASN][1000 genomes]
rs6660109	0.92[ASN][1000 genomes]
rs6660716	0.92[ASN][1000 genomes]
rs6663555	0.92[ASN][1000 genomes]
rs7525811	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7553957	0.91[ASN][1000 genomes]
rs835661	0.87[ASW][hapmap];0.84[CHB][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226984400-226989200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr1:226985000-226990000	Enhancers	Primary T cells from cord blood	blood
3	chr1:226986400-226989200	Enhancers	Colon Smooth Muscle	Colon
4	chr1:226987000-226989400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr1:226987000-226989600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr1:226987200-227001400	Weak transcription	Right Atrium	heart
7	chr1:226987400-226991400	Weak transcription	Lung	lung
8	chr1:226987400-226992000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:226987400-226997400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:226987600-226989200	Weak transcription	K562	blood
11	chr1:226988600-226990800	Weak transcription	Thymus	Thymus
12	chr1:226988600-226992800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr1:226988800-226990000	Weak transcription	Fetal Thymus	thymus
14	chr1:226989000-226989200	Weak transcription	Placenta Amnion	Placenta Amnion

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