Variant report

Variant	rs34741989
Chromosome Location	chr1:227003356-227003357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:226997587..227000105-chr1:227001744..227003689,2	K562	blood:
2	chr1:226924516..226928386-chr1:226999623..227003731,5	MCF-7	breast:
3	chr1:226898681..226901320-chr1:227002412..227005271,2	MCF-7	breast:
4	chr1:227001349..227004344-chr1:227005535..227008816,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143772	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10799368	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10916042	0.92[ASN][1000 genomes]
rs10916043	0.92[ASN][1000 genomes]
rs10916054	0.93[EUR][1000 genomes]
rs1150895	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1150896	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11590925	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12039247	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12044509	0.92[ASN][1000 genomes]
rs12126209	0.99[EUR][1000 genomes]
rs12128150	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12130758	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12131495	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12133772	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12133818	0.98[EUR][1000 genomes]
rs12563993	0.97[ASN][1000 genomes]
rs12749910	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1295642	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1295645	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1295648	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1295651	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2855563	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61835655	0.89[ASN][1000 genomes]
rs61835656	0.89[ASN][1000 genomes]
rs61835658	0.90[ASN][1000 genomes]
rs61837761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61837762	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61837763	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6426542	0.97[EUR][1000 genomes]
rs6426543	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6426545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6426546	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660109	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660716	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6663555	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6678134	0.98[EUR][1000 genomes]
rs743602	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7525811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553957	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9660802	0.99[EUR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226994800-227007000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:226995000-227003400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:226995800-227009800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:227000800-227004200	Enhancers	Fetal Intestine Large	intestine
5	chr1:227001400-227003400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:227001400-227003400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:227001400-227003400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:227001400-227003400	Enhancers	Brain Cingulate Gyrus	brain
9	chr1:227001400-227003400	Enhancers	Brain Hippocampus Middle	brain
10	chr1:227001400-227003400	Enhancers	Brain Substantia Nigra	brain
11	chr1:227001400-227003400	Enhancers	Left Ventricle	heart
12	chr1:227001400-227003400	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr1:227001400-227003400	Enhancers	Thymus	Thymus
14	chr1:227001400-227003400	Enhancers	HSMM	muscle
15	chr1:227001400-227003400	Enhancers	HSMMtube	muscle
16	chr1:227001400-227003600	Enhancers	Duodenum Mucosa	Duodenum
17	chr1:227001400-227003600	Enhancers	Fetal Muscle Leg	muscle
18	chr1:227001400-227003600	Enhancers	Psoas Muscle	Psoas
19	chr1:227001400-227004000	Enhancers	Adipose Nuclei	Adipose
20	chr1:227001400-227004000	Enhancers	Fetal Thymus	thymus
21	chr1:227001400-227004000	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr1:227001400-227004200	Enhancers	Fetal Intestine Small	intestine
23	chr1:227001400-227005000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:227001400-227005000	Enhancers	HMEC	breast
25	chr1:227001400-227005200	Enhancers	NHLF	lung
26	chr1:227001600-227003400	Enhancers	Brain Angular Gyrus	brain
27	chr1:227001600-227003400	Enhancers	Rectal Smooth Muscle	rectum
28	chr1:227001600-227003600	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr1:227001600-227004000	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr1:227001600-227004200	Enhancers	Brain Anterior Caudate	brain
31	chr1:227001600-227005200	Enhancers	NHDF-Ad	bronchial
32	chr1:227001800-227004800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr1:227001800-227005200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr1:227001800-227005200	Enhancers	Placenta Amnion	Placenta Amnion
35	chr1:227002000-227003400	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr1:227002000-227003400	Enhancers	Right Ventricle	heart
37	chr1:227002000-227003600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr1:227002000-227003600	Enhancers	Fetal Muscle Trunk	muscle
39	chr1:227002000-227003600	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr1:227002000-227003800	Enhancers	Fetal Stomach	stomach
41	chr1:227002000-227004800	Enhancers	Placenta	Placenta
42	chr1:227002000-227005000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr1:227002200-227003400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr1:227002200-227005200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr1:227002400-227003400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:227002400-227003400	Enhancers	Muscle Satellite Cultured Cells	--
47	chr1:227002400-227003400	Enhancers	Colonic Mucosa	Colon
48	chr1:227002400-227003400	Enhancers	Fetal Kidney	kidney
49	chr1:227002400-227003400	Enhancers	Fetal Lung	lung
50	chr1:227002400-227003400	Flanking Active TSS	Stomach Smooth Muscle	stomach

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