Variant report

Variant	rs10919197
Chromosome Location	chr1:169554756-169554757
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169554006..169554804-chrX:81997894..81998531,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3917748	1.00[EUR][1000 genomes]
rs3917753	1.00[EUR][1000 genomes]
rs3917754	1.00[EUR][1000 genomes]
rs3917755	1.00[EUR][1000 genomes]
rs3917770	1.00[EUR][1000 genomes]
rs3917781	1.00[EUR][1000 genomes]
rs3917816	1.00[EUR][1000 genomes]
rs3917821	1.00[EUR][1000 genomes]
rs3917849	1.00[EUR][1000 genomes]
rs9332477	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332571	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv548187	chr1:169530837-169559035	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv872534	chr1:169533266-169561274	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169542200-169554800	Weak transcription	Placenta	Placenta
2	chr1:169553800-169554800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:169553800-169555200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr1:169553800-169555400	Active TSS	Primary T cells fromperipheralblood	blood
5	chr1:169553800-169555800	Active TSS	Liver	Liver
6	chr1:169554000-169555000	Active TSS	HepG2	liver
7	chr1:169554000-169555600	Bivalent/Poised TSS	Primary B cells from cord blood	blood
8	chr1:169554200-169555400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:169554400-169554800	Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr1:169554400-169554800	Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr1:169554400-169554800	Active TSS	Monocytes-CD14+_RO01746	blood
12	chr1:169554400-169555000	Active TSS	Primary monocytes fromperipheralblood	blood
13	chr1:169554400-169555000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:169554400-169555200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:169554400-169555200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr1:169554400-169555400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:169554400-169555400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:169554400-169555400	Active TSS	Primary T cells from cord blood	blood
19	chr1:169554400-169555400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr1:169554400-169555400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
21	chr1:169554400-169555400	Bivalent Enhancer	Adipose Nuclei	Adipose
22	chr1:169554400-169555400	Weak transcription	Pancreas	Pancrea
23	chr1:169554400-169555400	Weak transcription	Right Atrium	heart
24	chr1:169554400-169555400	Weak transcription	HMEC	breast
25	chr1:169554400-169555400	Weak transcription	NHEK	skin
26	chr1:169554400-169555600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr1:169554400-169555800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
28	chr1:169554600-169554800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:169554600-169555000	Active TSS	Primary T helper cells fromperipheralblood	blood
30	chr1:169554600-169555800	Active TSS	Primary hematopoietic stem cells	blood

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