Variant report

Variant	rs3917753
Chromosome Location	chr1:169576007-169576008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10919197	1.00[EUR][1000 genomes]
rs3917748	1.00[EUR][1000 genomes]
rs3917754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3917755	1.00[EUR][1000 genomes]
rs3917770	1.00[EUR][1000 genomes]
rs3917781	1.00[EUR][1000 genomes]
rs3917816	1.00[EUR][1000 genomes]
rs3917821	1.00[EUR][1000 genomes]
rs3917849	1.00[EUR][1000 genomes]
rs9332477	1.00[EUR][1000 genomes]
rs9332571	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv872538	chr1:169567516-169576207	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169565400-169581400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:169569800-169576400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr1:169570200-169576400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:169570400-169576600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr1:169570400-169585400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:169573600-169576400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:169574600-169576200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:169574600-169576400	Enhancers	Primary T cells from cord blood	blood
9	chr1:169574600-169576400	Enhancers	Primary T cells fromperipheralblood	blood
10	chr1:169574600-169576400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr1:169574800-169576400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr1:169574800-169576600	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr1:169574800-169578800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:169574800-169583000	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr1:169575000-169576200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr1:169575200-169580600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:169575400-169577200	Weak transcription	Primary B cells from cord blood	blood
18	chr1:169576000-169578800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr1:169576000-169580200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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