Variant report

Variant	rs9332571
Chromosome Location	chr1:169527988-169527989
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10919197	1.00[EUR][1000 genomes]
rs12086677	1.00[AMR][1000 genomes]
rs3917397	1.00[AMR][1000 genomes]
rs3917437	1.00[AMR][1000 genomes]
rs3917748	1.00[EUR][1000 genomes]
rs3917753	1.00[EUR][1000 genomes]
rs3917754	1.00[EUR][1000 genomes]
rs3917755	1.00[EUR][1000 genomes]
rs3917770	1.00[EUR][1000 genomes]
rs3917781	1.00[EUR][1000 genomes]
rs3917816	1.00[EUR][1000 genomes]
rs3917821	1.00[EUR][1000 genomes]
rs3917849	1.00[EUR][1000 genomes]
rs4987305	1.00[AMR][1000 genomes]
rs4987315	1.00[AMR][1000 genomes]
rs9332477	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169505800-169534800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr1:169506200-169542800	Weak transcription	Right Ventricle	heart
3	chr1:169507000-169530800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr1:169516000-169531400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:169517200-169530400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr1:169518000-169531000	Strong transcription	HepG2	liver
7	chr1:169518400-169531000	Strong transcription	Liver	Liver
8	chr1:169523000-169530200	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr1:169523000-169530800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr1:169524600-169541800	Weak transcription	Placenta	Placenta
11	chr1:169525400-169528000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr1:169526200-169530200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:169526600-169529400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr1:169526600-169532200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr1:169527000-169528600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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