Variant report

Variant	rs10921106
Chromosome Location	chr1:192150402-192150403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10921101	1.00[AFR][1000 genomes]
rs10921136	1.00[AFR][1000 genomes]
rs12058024	1.00[AFR][1000 genomes]
rs12085113	1.00[AFR][1000 genomes]
rs12087357	1.00[AFR][1000 genomes]
rs12088175	1.00[AFR][1000 genomes]
rs12091409	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430047	chr1:191811587-192203678	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192141800-192151600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:192142000-192150600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:192146600-192155800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr1:192146800-192155000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:192147400-192154600	Strong transcription	Dnd41	blood
6	chr1:192147400-192155800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr1:192148000-192154600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:192148200-192156000	Strong transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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