Variant report

Variant	rs12058024
Chromosome Location	chr1:192156707-192156708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10921101	1.00[AFR][1000 genomes]
rs10921106	1.00[AFR][1000 genomes]
rs10921136	1.00[AFR][1000 genomes]
rs12085113	1.00[AFR][1000 genomes]
rs12087357	1.00[AFR][1000 genomes]
rs12088175	1.00[AFR][1000 genomes]
rs12091409	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430047	chr1:191811587-192203678	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192154600-192157000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr1:192155800-192156800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr1:192155800-192158800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr1:192156000-192157800	Weak transcription	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links