Variant report

Variant	rs12085113
Chromosome Location	chr1:192128508-192128509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10921101	1.00[AFR][1000 genomes]
rs10921106	1.00[AFR][1000 genomes]
rs10921136	1.00[AFR][1000 genomes]
rs12058024	1.00[AFR][1000 genomes]
rs12087357	1.00[AFR][1000 genomes]
rs12088175	1.00[AFR][1000 genomes]
rs12091409	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007060	chr1:191577303-192141825	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv430047	chr1:191811587-192203678	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192126800-192128600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr1:192126800-192130000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:192127000-192129600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:192127200-192134200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:192127400-192128600	Flanking Active TSS	Dnd41	blood
6	chr1:192127400-192129600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:192127400-192129600	Active TSS	Monocytes-CD14+_RO01746	blood
8	chr1:192127600-192129000	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr1:192127600-192129200	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr1:192127600-192129200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:192127600-192129600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:192127600-192129600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
13	chr1:192127600-192129800	Active TSS	Primary monocytes fromperipheralblood	blood
14	chr1:192127800-192130600	Active TSS	Primary B cells from cord blood	blood
15	chr1:192128000-192130400	Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr1:192128200-192128600	Active TSS	Fetal Thymus	thymus
17	chr1:192128400-192128600	Flanking Active TSS	Primary T cells from cord blood	blood
18	chr1:192128400-192128600	Enhancers	Primary T helper cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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