Variant report

Variant	rs10921343
Chromosome Location	chr1:193321951-193321952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10754054	0.82[EUR][1000 genomes]
rs10754055	0.83[EUR][1000 genomes]
rs10801194	0.83[EUR][1000 genomes]
rs10921336	0.81[EUR][1000 genomes]
rs12025186	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12025393	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12032958	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12034095	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12037055	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12040365	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12040832	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12041558	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12041893	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12047390	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12048579	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12124282	0.92[ASN][1000 genomes]
rs1221502	0.86[EUR][1000 genomes]
rs1339961	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1361405	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1616234	0.83[EUR][1000 genomes]
rs1632444	0.83[EUR][1000 genomes]
rs16835282	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16835304	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16835319	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16835320	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16835338	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1749429	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1749430	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1749431	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1749432	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1769999	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1770000	0.92[ASN][1000 genomes]
rs1972344	0.81[EUR][1000 genomes]
rs1972345	0.86[EUR][1000 genomes]
rs2050799	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2254646	0.83[EUR][1000 genomes]
rs2275506	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2477549	0.85[EUR][1000 genomes]
rs2486843	0.92[ASN][1000 genomes]
rs4428863	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4657854	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4657855	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4657856	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4657858	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs497362	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs503265	0.83[EUR][1000 genomes]
rs515964	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs523402	0.80[EUR][1000 genomes]
rs524701	0.80[EUR][1000 genomes]
rs531327	0.81[ASN][1000 genomes]
rs543788	0.83[EUR][1000 genomes]
rs560900	0.86[EUR][1000 genomes]
rs569656	0.84[EUR][1000 genomes]
rs571029	0.82[EUR][1000 genomes]
rs578639	0.86[EUR][1000 genomes]
rs59264807	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6428159	0.80[EUR][1000 genomes]
rs6428163	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6428166	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6662104	0.92[ASN][1000 genomes]
rs6671476	0.83[EUR][1000 genomes]
rs6693734	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6697195	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6702762	0.92[ASN][1000 genomes]
rs7528595	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7543029	0.91[ASN][1000 genomes]
rs7550521	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs817136	0.80[EUR][1000 genomes]
rs817142	0.81[EUR][1000 genomes]
rs817143	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872831	chr1:193152317-193322087	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1001174	chr1:193186758-193363372	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv997891	chr1:193271839-193566441	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3447916	chr1:193321822-193322044	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193311000-193324000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr1:193316400-193323400	Weak transcription	Stomach Mucosa	stomach
3	chr1:193317800-193324800	Weak transcription	Psoas Muscle	Psoas
4	chr1:193318600-193323800	Weak transcription	Fetal Intestine Large	intestine
5	chr1:193318600-193325400	Weak transcription	HSMM	muscle
6	chr1:193320000-193325400	Weak transcription	HSMMtube	muscle
7	chr1:193321000-193325000	Weak transcription	Fetal Lung	lung

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