Variant report

Variant	rs1221502
Chromosome Location	chr1:193276975-193276976
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs10399607	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10399929	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10494674	0.95[CEU][hapmap];0.86[CHB][hapmap];0.95[YRI][hapmap]
rs10732293	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs10733078	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs10737621	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs10737622	0.86[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs10737623	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10754044	0.95[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap]
rs10754047	0.90[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs10754048	0.95[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs10754049	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs10754052	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.81[EUR][1000 genomes]
rs10754053	0.81[EUR][1000 genomes]
rs10754054	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10754055	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10801177	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs10801178	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs10801179	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs10801183	0.95[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap]
rs10801184	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs10801187	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs10801189	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs10801192	0.80[ASN][1000 genomes]
rs10801194	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10921312	0.81[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap]
rs10921318	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs10921323	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs10921325	1.00[ASW][hapmap];0.95[CEU][hapmap];0.94[GIH][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.81[EUR][1000 genomes]
rs10921326	0.95[CHB][hapmap]
rs10921330	0.95[CHB][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap]
rs10921336	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10921343	0.86[EUR][1000 genomes]
rs11577299	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs12025186	0.81[EUR][1000 genomes]
rs12025393	0.82[EUR][1000 genomes]
rs12032958	0.82[EUR][1000 genomes]
rs12034095	0.89[EUR][1000 genomes]
rs12037055	0.89[EUR][1000 genomes]
rs12040365	0.89[EUR][1000 genomes]
rs12040832	0.83[EUR][1000 genomes]
rs12041558	0.83[EUR][1000 genomes]
rs12041893	0.89[EUR][1000 genomes]
rs12047390	0.90[CEU][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs12048579	0.83[EUR][1000 genomes]
rs12090626	0.95[CHB][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap]
rs12126529	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs12145057	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs12410213	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs1325197	1.00[ASW][hapmap];0.90[CEU][hapmap];0.95[CHB][hapmap];0.94[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.81[EUR][1000 genomes]
rs1339961	0.87[EUR][1000 genomes]
rs1361405	0.90[CEU][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs1408830	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs1416977	0.99[ASN][1000 genomes]
rs1536097	0.81[EUR][1000 genomes]
rs1536098	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs1536099	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs1616234	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1632444	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16835282	0.93[EUR][1000 genomes]
rs16835304	0.89[EUR][1000 genomes]
rs16835319	0.83[EUR][1000 genomes]
rs16835320	0.83[EUR][1000 genomes]
rs1749424	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1749429	0.86[EUR][1000 genomes]
rs1749430	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1749431	0.92[EUR][1000 genomes]
rs1749432	0.93[EUR][1000 genomes]
rs1769999	0.93[EUR][1000 genomes]
rs1972344	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1972345	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2078083	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2181408	0.86[CEU][hapmap];0.95[CHB][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.85[TSI][hapmap];0.87[YRI][hapmap]
rs2182106	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2186016	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs2254646	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2275506	0.82[EUR][1000 genomes]
rs2370029	0.87[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs2370264	0.94[ASN][1000 genomes]
rs2477549	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2486842	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3738244	0.95[CHB][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap]
rs3806351	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs4379660	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4450000	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs4466634	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs4657744	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs4657847	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs4657848	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4657854	0.89[EUR][1000 genomes]
rs4657855	0.89[EUR][1000 genomes]
rs4657858	0.81[EUR][1000 genomes]
rs475163	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs497362	0.91[EUR][1000 genomes]
rs503265	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs515964	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs523402	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs524701	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs543788	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs560900	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs569656	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs571029	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs578639	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59264807	0.93[EUR][1000 genomes]
rs6428152	0.86[CEU][hapmap];0.95[CHB][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap]
rs6428153	0.81[EUR][1000 genomes]
rs6428154	0.95[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.95[YRI][hapmap];0.81[EUR][1000 genomes]
rs6428156	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs6428157	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs6428159	0.94[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6428160	0.86[EUR][1000 genomes]
rs6428163	0.89[EUR][1000 genomes]
rs6428166	0.89[EUR][1000 genomes]
rs6665069	0.82[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap]
rs6665666	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6671237	0.82[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap]
rs6671476	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6673271	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs6675833	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.80[EUR][1000 genomes]
rs6676878	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6680224	0.95[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs6693734	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6697079	0.90[CHB][hapmap]
rs6697195	0.81[EUR][1000 genomes]
rs693519	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7514072	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs7515024	0.95[CHB][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap]
rs7518792	0.86[CEU][hapmap];0.95[CHB][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap]
rs7519242	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs7528595	0.93[EUR][1000 genomes]
rs7545223	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7550521	0.89[EUR][1000 genomes]
rs817136	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs817138	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs817140	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs817142	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs817143	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs843844	0.94[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs942680	0.87[EUR][1000 genomes]
rs9783104	0.81[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap]
rs9887974	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832148	chr1:193143945-193292897	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv872831	chr1:193152317-193322087	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1001174	chr1:193186758-193363372	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv997891	chr1:193271839-193566441	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193255200-193280400	Weak transcription	HSMM	muscle
2	chr1:193276600-193283400	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links