The 2.0 version of rSNPBase

Variant report

Variant rs2078083
Chromosome Location chr1:193176584-193176585
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:193155600-193178400 Weak transcription HUVEC blood vessel
2 chr1:193155800-193183000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr1:193155800-193243400 Weak transcription Pancreas Pancrea
4 chr1:193156200-193216800 Weak transcription Aorta Aorta
5 chr1:193156600-193180200 Weak transcription NH-A brain
6 chr1:193159000-193210000 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr1:193159600-193178000 Weak transcription iPS-15b Cell Line embryonic stem cell
8 chr1:193159800-193185000 Weak transcription Fetal Brain Male brain
9 chr1:193160200-193180200 Weak transcription HSMMtube muscle
10 chr1:193162000-193186200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr1:193162000-193186200 Weak transcription Placenta Placenta
12 chr1:193162200-193180400 Weak transcription NHLF lung
13 chr1:193162200-193183000 Weak transcription Fetal Muscle Trunk muscle
14 chr1:193162200-193186200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr1:193162400-193186000 Weak transcription H1 Cell Line embryonic stem cell
16 chr1:193163000-193180000 Weak transcription Hela-S3 cervix
17 chr1:193164800-193177200 Weak transcription HSMM muscle
18 chr1:193166800-193181400 Weak transcription HUES48 Cell Line embryonic stem cell
19 chr1:193167800-193210400 Weak transcription Ovary ovary
20 chr1:193168000-193228400 Weak transcription Stomach Mucosa stomach
21 chr1:193168800-193184800 Weak transcription Fetal Stomach stomach
22 chr1:193169000-193190800 Weak transcription Brain Anterior Caudate brain
23 chr1:193169400-193186400 Weak transcription Left Ventricle heart
24 chr1:193170000-193186200 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr1:193170200-193191200 Weak transcription Rectal Smooth Muscle rectum
26 chr1:193170400-193216000 Weak transcription Primary T helper naive cells fromperipheralblood blood
27 chr1:193170800-193178400 Weak transcription HepG2 liver
28 chr1:193172600-193185600 Weak transcription Brain Hippocampus Middle brain
29 chr1:193172800-193180200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr1:193172800-193186200 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr1:193173400-193186400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:193173600-193181000 Strong transcription Primary T helper cells fromperipheralblood blood
33 chr1:193173800-193177800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr1:193174000-193176800 ZNF genes & repeats Primary T cells from cord blood blood
35 chr1:193174000-193177400 Strong transcription Primary T regulatory cells fromperipheralblood blood
36 chr1:193174000-193183000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
37 chr1:193174200-193178800 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
38 chr1:193174400-193176600 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
39 chr1:193174400-193176600 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
40 chr1:193174400-193176600 ZNF genes & repeats GM12878-XiMat blood
41 chr1:193174400-193176800 ZNF genes & repeats Primary B cells from peripheral blood blood
42 chr1:193174400-193177000 ZNF genes & repeats Primary T helper memory cells from peripheral blood 1 blood
43 chr1:193174600-193176600 Strong transcription Duodenum Smooth Muscle Duodenum
44 chr1:193174600-193178400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:193174600-193180200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr1:193174800-193176600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr1:193174800-193176800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
48 chr1:193174800-193177000 Strong transcription Adipose Nuclei Adipose
49 chr1:193174800-193178200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr1:193174800-193180400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015