Variant report

Variant	rs942680
Chromosome Location	chr1:193246319-193246320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:193230026..193232497-chr1:193244244..193247099,2	K562	blood:

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs10399607	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10399929	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10494674	0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10732293	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10733078	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10737620	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10737621	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10737622	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs10737623	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10754044	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10754047	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs10754048	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs10754049	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10754052	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10754053	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10754054	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10754055	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10801173	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10801177	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10801178	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10801179	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10801183	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10801184	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10801187	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10801188	0.88[ASN][1000 genomes]
rs10801189	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10801190	0.96[ASN][1000 genomes]
rs10801191	1.00[ASN][1000 genomes]
rs10801192	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10801194	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10921308	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10921312	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10921318	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10921323	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10921325	0.90[CEU][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10921326	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10921328	0.97[ASN][1000 genomes]
rs10921330	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10921334	1.00[ASN][1000 genomes]
rs10921336	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11577299	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12064521	0.97[ASN][1000 genomes]
rs12078145	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12090626	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12126529	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs12145057	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1221502	0.87[EUR][1000 genomes]
rs12410213	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1325197	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1339961	0.88[EUR][1000 genomes]
rs1408830	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1536097	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1536098	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.99[ASN][1000 genomes]
rs1536099	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1539724	0.90[JPT][hapmap]
rs1578242	1.00[ASN][1000 genomes]
rs1578243	1.00[ASN][1000 genomes]
rs1616234	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1632444	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16835282	0.83[EUR][1000 genomes]
rs1749424	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1749429	0.87[EUR][1000 genomes]
rs1749430	0.82[EUR][1000 genomes]
rs1749431	0.82[EUR][1000 genomes]
rs1749432	0.83[EUR][1000 genomes]
rs1769999	0.83[EUR][1000 genomes]
rs1972344	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1972345	0.87[EUR][1000 genomes]
rs2078083	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2181408	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2182106	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2186016	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2251699	1.00[ASN][1000 genomes]
rs2254646	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2275444	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2370029	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2477549	0.86[EUR][1000 genomes]
rs2486842	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3738244	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3806351	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4379660	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4450000	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4466634	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4657744	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4657747	0.97[ASN][1000 genomes]
rs4657843	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4657847	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4657848	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs474328	1.00[ASN][1000 genomes]
rs475163	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497362	0.81[EUR][1000 genomes]
rs503265	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs515964	0.81[EUR][1000 genomes]
rs523402	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs524701	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs543788	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs560900	0.87[EUR][1000 genomes]
rs569656	0.85[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes]
rs571029	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs578639	0.87[EUR][1000 genomes]
rs59264807	0.83[EUR][1000 genomes]
rs6428152	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs6428153	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6428154	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6428155	0.86[ASN][1000 genomes]
rs6428156	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6428157	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.99[ASN][1000 genomes]
rs6428159	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6428160	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6663162	0.88[ASN][1000 genomes]
rs6665069	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6665666	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6671237	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6671476	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6673271	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6675827	1.00[ASN][1000 genomes]
rs6675833	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6676878	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6680224	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6689006	0.96[ASN][1000 genomes]
rs6693734	0.85[CEU][hapmap]
rs6697079	0.90[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs693519	0.95[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7514072	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7515024	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7518792	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7519242	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs7528595	0.83[EUR][1000 genomes]
rs7545223	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7546869	0.86[ASN][1000 genomes]
rs7547615	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7554925	0.86[ASN][1000 genomes]
rs817136	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817138	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs817140	0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs817142	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs817143	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs843844	0.95[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs912070	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs912071	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9783104	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832148	chr1:193143945-193292897	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv872831	chr1:193152317-193322087	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1001174	chr1:193186758-193363372	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193218600-193258200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:193222400-193253800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:193229000-193254800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:193231600-193251200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:193232000-193249400	Weak transcription	Fetal Heart	heart
6	chr1:193235400-193252000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:193235400-193252200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:193239800-193254600	Weak transcription	HSMM	muscle
9	chr1:193241000-193251800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:193243800-193250000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:193243800-193254400	Weak transcription	HSMMtube	muscle
12	chr1:193243800-193267800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:193245000-193252000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:193245400-193253200	Weak transcription	Primary T cells from cord blood	blood

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