Variant report

Variant	rs912071
Chromosome Location	chr1:193075108-193075109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr1:193073759-193075192	A549	lung:	n/a	n/a
2	SIN3AK20	chr1:193073210-193075235	MCF-7	breast:	n/a	n/a
3	GATA3	chr1:193074315-193075239	MCF-7	breast:	n/a	chr1:193074749-193074757
4	FOXA2	chr1:193075095-193075353	HepG2	liver:	n/a	n/a
5	JUND	chr1:193072918-193075266	K562	blood:	n/a	chr1:193074257-193074265 chr1:193074257-193074264 chr1:193073875-193073886 chr1:193074257-193074265 chr1:193074255-193074266
6	SP1	chr1:193073784-193075297	A549	lung:	n/a	chr1:193074307-193074314
7	REST	chr1:193073793-193075140	A549	lung:	n/a	chr1:193074316-193074329
8	EP300	chr1:193073190-193075197	K562	blood:	n/a	chr1:193074257-193074266 chr1:193074632-193074641 chr1:193073821-193073835
9	CHD1	chr1:193072871-193075496	IMR90	lung:	n/a	n/a
10	ZNF384	chr1:193074182-193075626	K562	blood:	n/a	n/a
11	STAT3	chr1:193074731-193075193	MCF10A-Er-Src	breast:	n/a	n/a
12	RAD21	chr1:193073158-193075129	IMR90	lung:	n/a	chr1:193074208-193074221 chr1:193074210-193074222
13	CEBPB	chr1:193074839-193075260	A549	lung:	n/a	n/a
14	MXI1	chr1:193072889-193075247	IMR90	lung:	n/a	n/a
15	POLR2A	chr1:193072085-193075457	IMR90	lung:	n/a	n/a
16	MYC	chr1:193073234-193075374	K562	blood:	n/a	n/a
17	POLR2A	chr1:193073247-193075289	GM12891	blood:	n/a	n/a
18	TBL1XR1	chr1:193072815-193075270	K562	blood:	n/a	n/a
19	CEBPB	chr1:193074771-193075213	K562	blood:	n/a	n/a
20	MYC	chr1:193073512-193075225	Hela-S3	cervix:	n/a	n/a
21	USF2	chr1:193074715-193075346	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr1:193073630-193075317	K562	blood:	n/a	n/a
23	MAZ	chr1:193073061-193075338	K562	blood:	n/a	n/a
24	MAFK	chr1:193073625-193075221	Hela-S3	cervix:	n/a	n/a
25	IRF1	chr1:193073718-193075389	K562	blood:	n/a	chr1:193073928-193073937 chr1:193074256-193074265 chr1:193074257-193074266
26	GATA3	chr1:193073986-193075164	A549	lung:	n/a	chr1:193074749-193074757
27	TCF12	chr1:193073514-193075534	A549	lung:	n/a	n/a
28	TBP	chr1:193073042-193075134	K562	blood:	n/a	n/a
29	RCOR1	chr1:193072734-193075344	K562	blood:	n/a	n/a
30	PML	chr1:193073394-193075154	K562	blood:	n/a	chr1:193074255-193074264
31	MYC	chr1:193073300-193075108	K562	blood:	n/a	n/a
32	FOXA2	chr1:193075047-193075507	A549	lung:	n/a	n/a
33	EP300	chr1:193074700-193075275	GM12878	blood:	n/a	n/a
34	MXI1	chr1:193073257-193075426	SK-N-SH	brain:	n/a	n/a
35	POLR2A	chr1:193073041-193075253	MCF10A-Er-Src	breast:	n/a	n/a
36	MYC	chr1:193073778-193075255	MCF10A-Er-Src	breast:	n/a	n/a
37	CEBPB	chr1:193073451-193075119	Hela-S3	cervix:	n/a	chr1:193073639-193073652
38	POLR2A	chr1:193074310-193075108	GM12878	blood:	n/a	n/a
39	NR2F2	chr1:193073204-193075191	K562	blood:	n/a	n/a
40	POLR2A	chr1:193073515-193075356	K562	blood:	n/a	n/a
41	MAZ	chr1:193073978-193075528	IMR90	lung:	n/a	n/a
42	POLR2A	chr1:193073201-193075332	MCF10A-Er-Src	breast:	n/a	n/a
43	RCOR1	chr1:193073073-193075226	K562	blood:	n/a	n/a
44	SIN3AK20	chr1:193073389-193075156	MCF-7	breast:	n/a	n/a
45	SP1	chr1:193073994-193075361	A549	lung:	n/a	chr1:193074307-193074314
46	POLR2A	chr1:193073533-193075465	Hela-S3	cervix:	n/a	n/a
47	CUX1	chr1:193074635-193075157	K562	blood:	n/a	n/a
48	MAX	chr1:193073368-193075148	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:193074180..193075233-chr1:193090769..193091716,3	Hela-S3	cervix:
2	chr1:193026932..193030661-chr1:193071909..193075798,10	K562	blood:
3	chr1:193074126..193075410-chr1:193090821..193091752,7	MCF-7	breast:
4	chr1:193027166..193030257-chr1:193073439..193079424,9	MCF-7	breast:
5	chr1:193073789..193075142-chr1:193090301..193091722,13	MCF-7	breast:
6	chr1:193074299..193075126-chr1:193090691..193091321,4	K562	blood:
7	chr1:193071213..193080146-chr1:193088491..193094639,51	MCF-7	breast:
8	chr1:193020543..193046917-chr1:193069266..193098746,125	K562	blood:
9	chr1:193071491..193076891-chr1:193086924..193094906,44	MCF-7	breast:
10	chr1:193027586..193031673-chr1:193072686..193075563,11	MCF-7	breast:
11	chr1:193074044..193075993-chr1:193105270..193107522,3	MCF-7	breast:
12	chr1:193074228..193075188-chr11:10326227..10327050,2	Hela-S3	cervix:
13	chr1:193074533..193075156-chr6:99395273..99395964,2	Hela-S3	cervix:
14	chr1:193033762..193041249-chr1:193071629..193075233,8	K562	blood:
15	chr1:193060114..193062197-chr1:193073397..193075467,2	MCF-7	breast:
16	chr1:193073395..193075181-chr1:193090593..193091565,9	MCF-7	breast:
17	chr1:193073518..193075825-chr16:84536562..84538522,2	MCF-7	breast:

Variant related genes	Relation type
GLRX2	TF binding region
ENSG00000148926	Chromatin interaction
ENSG00000134371	Chromatin interaction
ENSG00000221680	Chromatin interaction
ENSG00000238754	Chromatin interaction
ENSG00000116747	Chromatin interaction
ENSG00000140950	Chromatin interaction
ENSG00000272579	Chromatin interaction
ENSG00000116750	Chromatin interaction
ENSG00000112234	Chromatin interaction

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10494674	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10732293	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10733078	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10737620	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10737621	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10737622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10754044	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10754046	0.87[ASN][1000 genomes]
rs10754047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10754048	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10754049	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10754052	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap]
rs10801167	0.88[ASN][1000 genomes]
rs10801173	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10801174	0.99[ASN][1000 genomes]
rs10801175	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10801177	1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10801178	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10801179	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10801180	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10801182	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10801183	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10801184	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10801187	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10801189	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap]
rs10921304	0.81[ASN][1000 genomes]
rs10921305	0.89[ASN][1000 genomes]
rs10921308	0.91[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10921309	0.81[CHD][hapmap]
rs10921310	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10921312	0.94[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10921313	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10921317	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10921318	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10921319	0.86[ASN][1000 genomes]
rs10921323	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10921325	0.91[CEU][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.91[YRI][hapmap]
rs10921326	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap]
rs10921330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs11577299	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11583763	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12086884	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12090626	1.00[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12126529	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12137318	0.86[ASN][1000 genomes]
rs12141392	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12145057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12410213	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12735445	0.91[ASN][1000 genomes]
rs1325197	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap]
rs1408830	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap]
rs1536098	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1536099	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1539724	0.86[GIH][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs1555555	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1890660	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2181408	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2182106	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap]
rs2186016	1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2275444	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2370028	0.86[ASN][1000 genomes]
rs2370029	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.87[YRI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2370079	0.82[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[ASN][1000 genomes]
rs2370081	0.88[ASN][1000 genomes]
rs3738244	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs3753948	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3806351	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3818865	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3820417	0.94[ASW][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3945872	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4379660	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap]
rs4450000	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4466634	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4657744	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4657745	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4657840	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4657842	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4657843	0.91[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4657845	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4657846	0.89[ASN][1000 genomes]
rs4657847	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4657848	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap]
rs4658079	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs569656	0.86[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap]
rs6428151	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6428152	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6428154	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs6428156	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap]
rs6428157	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap]
rs6428159	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.87[YRI][hapmap]
rs6661522	0.81[CHB][hapmap];0.84[CHD][hapmap]
rs6663431	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6665069	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6665666	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap]
rs6671237	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6672649	0.88[ASN][1000 genomes]
rs6673271	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap]
rs6675833	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.91[YRI][hapmap]
rs6676322	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6676416	0.93[ASW][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.81[MKK][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6676878	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap]
rs6680224	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6692342	0.94[ASW][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6692805	0.90[ASN][1000 genomes]
rs6697079	0.95[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap]
rs6703727	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs693519	0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap]
rs7514072	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7515024	1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs7518792	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs7519242	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7534257	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7542466	0.91[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7547615	1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7553247	0.94[ASN][1000 genomes]
rs817140	0.95[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.91[YRI][hapmap]
rs843844	0.81[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.87[YRI][hapmap]
rs912070	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9427838	0.94[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9783104	0.94[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1002094	chr1:192968080-193084045	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3336724	chr1:193074336-193075716	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193073000-193075400	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr1:193073000-193075400	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr1:193073200-193075200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr1:193073200-193075200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:193073200-193075400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:193073200-193075400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:193073200-193075400	Active TSS	Brain Germinal Matrix	brain
8	chr1:193073400-193075200	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr1:193073400-193075200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:193073400-193075200	Active TSS	Rectal Smooth Muscle	rectum
11	chr1:193073400-193075200	Active TSS	Right Ventricle	heart
12	chr1:193073400-193075200	Active TSS	HSMMtube	muscle
13	chr1:193073400-193075400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:193073600-193075200	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr1:193073600-193075200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr1:193073600-193075200	Active TSS	Primary T cells from cord blood	blood
17	chr1:193073600-193075200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:193073600-193075200	Active TSS	Fetal Brain Female	brain
19	chr1:193073600-193075200	Active TSS	NH-A	brain
20	chr1:193073600-193075400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:193073600-193075400	Active TSS	Brain Hippocampus Middle	brain
22	chr1:193073800-193075200	Active TSS	H1 Cell Line	embryonic stem cell
23	chr1:193073800-193075200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr1:193073800-193075200	Active TSS	Primary hematopoietic stem cells	blood
25	chr1:193073800-193075200	Active TSS	Liver	Liver
26	chr1:193073800-193075200	Active TSS	Fetal Muscle Leg	muscle
27	chr1:193073800-193075200	Active TSS	HMEC	breast
28	chr1:193073800-193075400	Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr1:193073800-193075400	Active TSS	Fetal Brain Male	brain
30	chr1:193074000-193075200	Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr1:193074000-193075400	Active TSS	Rectal Mucosa Donor 31	rectum
32	chr1:193074600-193075200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr1:193074600-193075200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr1:193074600-193075400	Flanking Active TSS	Dnd41	blood
35	chr1:193074800-193075200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr1:193074800-193075200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr1:193074800-193075200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr1:193074800-193075200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr1:193074800-193075200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
40	chr1:193074800-193075200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr1:193074800-193075200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
42	chr1:193074800-193075200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:193074800-193075200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr1:193074800-193075200	Flanking Active TSS	Adipose Nuclei	Adipose
45	chr1:193074800-193075200	Flanking Active TSS	Brain Anterior Caudate	brain
46	chr1:193074800-193075200	Flanking Active TSS	Brain Cingulate Gyrus	brain
47	chr1:193074800-193075200	Flanking Active TSS	Duodenum Mucosa	Duodenum
48	chr1:193074800-193075200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
49	chr1:193074800-193075200	Flanking Active TSS	Fetal Heart	heart
50	chr1:193074800-193075200	Flanking Active TSS	Fetal Intestine Small	intestine

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